SCRUM - Annotations
Closed this issue · 1 comments
Charlie-George commented
Transcript support level is only available from biomart for more recent versions - is there a different mapping for hg19 - do downstream pipeline rely on this - ( transcript diff expression for example ) make sure this is noted in the ini files of those pipelines also
MikeDMorgan commented
downloadTranscriptSynonyms also tries to access biomaRt with a specific set of column names which fails for older ensembl builds. Also needs to be more flexible.