Issues
- 2
Change time requested for job
#437 opened by lucygarner - 1
resolvepackagenotfound
#436 opened by miemonti - 2
No transcript_info table with pipeline_genesets
#434 opened by TomSmithCGAT - 18
- 2
- 0
hard coded param in PipelinePeakcalling
#421 opened by Acribbs - 1
pipeline_mapping.py uploads duplicated read counts when mergeReadCounts is not performed
#419 opened by nickilott - 0
Changing the hierarchy of ini files
#410 opened by sebastian-luna-valero - 2
Reference genome "*.fasta" in addition to ".fa"
#407 opened by kevinrue - 1
replace annotation reference in template
#400 opened by Acribbs - 5
fastq naming convention
#388 opened by sebastian-luna-valero - 1
bamstats report
#394 opened by Acribbs - 2
trim_galore in readqc
#387 opened by sebastian-luna-valero - 1
merge bam final target for mapping
#383 opened by Acribbs - 13
- 5
- 1
pandas module is deprecated
#378 opened by Acribbs - 5
- 13
GCProfile
#366 opened by sebastian-luna-valero - 2
pipeline_exome
#204 opened by logust79 - 3
Configurable database backend in CGAT pipelines
#295 opened by MikeDMorgan - 7
database in mapping report
#289 opened by IanSudbery - 0
buildBedContext function in pipeline_rnaseqqc.py does not work for older genome builds
#248 opened by haniap - 2
Annotations Pipeline Requirements
#320 opened by jscaber - 6
SCRUM - PipelinePeakcallingScrum
#240 opened by Charlie-George - 2
SCRUM - pipeline peakcalling scrum
#241 opened by Charlie-George - 4
pipeline_rnaseqqc.py: AttributeError: 'pandas._libs.interval.Interval' object has no attribute 'replace'
#334 opened by sebastian-luna-valero - 1
SCRUM - Annotations
#249 opened by Charlie-George - 1
GENCODE tags in Ensembl GTF
#256 opened by TomSmithCGAT - 8
backports.configparser.InterpolationSyntaxError
#335 opened by snsansom - 1
Changes to pipeline.ini files (global)
#332 opened by jscaber - 4
import pandas.rpy.common as com
#326 opened by sebastian-luna-valero - 2
Picard Refflat Bugfix (pipeline_mapping.py)
#321 opened by jscaber - 5
- 8
pipeline_testing not picking up certain files
#301 opened by Charlie-George - 2
Errors caused by change in job scripts
#297 opened by IanSudbery - 1
pipeline_peakcallingScrum (Peakcalling-Scrum-2016): Missing parameters from the ini file
#296 opened by jaime11 - 1
pipeline_readqc
#288 opened by Charlie-George - 1
Time is not imported in Cluster.py
#218 opened by dcdanko - 2
- 0
- 2
Broken Relational Imports in CGATReports
#261 opened by jscaber - 1
- 1
- 1
CRAM intergration
#232 opened by IanSudbery - 3
Transparent access to data repositories
#233 opened by IanSudbery - 3
pipeline xxxx.py config default behaviour change
#201 opened by snsansom - 1
SRA extract fails for SOLID data
#216 opened by TomSmithCGAT - 1
pipeline_quickstart.py
#215 opened by Charlie-George - 7
pipeline _readqc report failure
#203 opened by Charlie-George