Change time requested for job

[lucygarner]

Hi,

Is there an option you can pass to P.run() to change the time requested for a job? I couldn't see an obvious one in https://github.com/CGATOxford/CGATPipelines/blob/master/CGATPipelines/Pipeline/Execution.py? I am using a Slurm server.

Best wishes,
Lucy

[TomSmithCGAT]

Hi Lucy,

You can add further arguments to be passed to the job scheduler by creating a job_options string, which will be picked up by P.run(). E.g to ask for 2 hours with slurm:

job_options = " -t 2:00:00"
P.run()

This repository is also no longer supported. See https://github.com/cgat-developers/cgat-core for the up to date repository.

Best wishes,

Tom

[lucygarner]

Great, thank you. I'll give it a go.