CGAT

Oxford, UK

Pinned Repositories

cgat
Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps
Language:Python124 38 19366
CGATPipelines
Collection of CGAT NGS Pipelines
Language:Python43 23 14818
CGATTests
Test scripts and configuration for Jenkins CI testing of workflows
Language:Python1 22 01
DanQ_tensorflow
tensorflow adaptation of DanQ
Language:Jupyter Notebook2 6 20
dashboard
Dashboard to monitor projects and software development within the CGAT group (www.cgat.org)
Language:JavaScript4 8 05
proj029
Scripts for proj029
Language:Python2 24 00
python-hpc
Fork of the training material for the course: "Python for HPC" originally created by http://www.archer.ac.uk/ and adapted by http://www.arc.ox.ac.uk/
Language:Jupyter Notebook2 4 00
scholar.py
A parser for Google Scholar, written in Python
Language:Python1 8 00
UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
Language:Python473 36 485188
UMI-tools_pipelines
Pipelines for re-analysis of iCLIP and scRNA-Seq data for UMI-tools publication
Language:Jupyter Notebook10 7 35

CGAT's Repositories

CGATOxford/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
Language:Python473 36 485188
CGATOxford/cgat
Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps
Language:Python124 38 19366
CGATOxford/CGATPipelines
Collection of CGAT NGS Pipelines
Language:Python43 23 14818
CGATOxford/UMI-tools_pipelines
Pipelines for re-analysis of iCLIP and scRNA-Seq data for UMI-tools publication
Language:Jupyter Notebook10 7 35
CGATOxford/dashboard
Dashboard to monitor projects and software development within the CGAT group (www.cgat.org)
Language:JavaScript4 8 05
CGATOxford/DanQ_tensorflow
tensorflow adaptation of DanQ
Language:Jupyter Notebook2 6 20
CGATOxford/proj029
Scripts for proj029
Language:Python2 24 00
CGATOxford/python-hpc
Fork of the training material for the course: "Python for HPC" originally created by http://www.archer.ac.uk/ and adapted by http://www.arc.ox.ac.uk/
Language:Jupyter Notebook2 4 00
CGATOxford/CGATTests
Test scripts and configuration for Jenkins CI testing of workflows
Language:Python1 22 01
CGATOxford/scholar.py
A parser for Google Scholar, written in Python
Language:Python1 8 00
CGATOxford/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell4 0
CGATOxford/CGATCore
Further development of the CGATCore has moved to a new repository. Please see
Language:Python22 11
CGATOxford/CGATViewer
A script to display genomic data
Language:Python22 61
CGATOxford/conda-recipes
build and test recipes for conda
Language:Shell7 0
CGATOxford/genserv-zope
Scripts for building the genserv web server
Language:Python4 0
CGATOxford/Notebooks
ipython Notebooks
Language:Jupyter Notebook22 0
CGATOxford/Optic
Comparative genomics code for Optic, Gpipe and other projects.
Language:Python7 01
CGATOxford/Pipeline_iCLIP
iCLIP analysis pipeline created for project 028
Language:Python5 11

CGAT

Pinned Repositories

cgat

CGATPipelines

CGATTests

DanQ_tensorflow

dashboard

proj029

python-hpc

scholar.py

UMI-tools

UMI-tools_pipelines

CGAT's Repositories

CGATOxford/UMI-tools

CGATOxford/cgat

CGATOxford/CGATPipelines

CGATOxford/UMI-tools_pipelines

CGATOxford/dashboard

CGATOxford/DanQ_tensorflow

CGATOxford/proj029

CGATOxford/python-hpc

CGATOxford/CGATTests

CGATOxford/scholar.py

CGATOxford/bioconda-recipes

CGATOxford/CGATCore

CGATOxford/CGATViewer

CGATOxford/conda-recipes

CGATOxford/genserv-zope

CGATOxford/Notebooks

CGATOxford/Optic

CGATOxford/Pipeline_iCLIP