Issues
- 0
umi tools 1.1.5 not available on pypi
#652 opened by johandahlberg - 1
- 4
'extract' is not a UMI-tools command.
#645 opened by yueli8 - 7
- 2
Documentation improvement suggestion
#648 opened by hazmup - 4
UMI-tool 1.1.5 not working with --per-gene --per-contig --gene-transcript-map
#646 opened by pclavell - 2
samtools error in umi-tools dedup
#638 opened by rfreeman7 - 0
Filter for low read-depth UMIs?
#649 opened by gdlampe - 9
- 2
- 5
- 3
- 4
umi_tools not "extracting" any barcodes, while the same command had worked before
#612 opened by kvn95ss - 2
UMI-tools duplicated removal
#639 opened by mwylerCH - 4
Umitools Deduplication with STAR Alignment
#637 opened by hserio - 7
- 2
UMI_extract for paired end reads of micro_RNA
#633 opened by oneito - 1
Potential problem with Pandas
#615 opened by kvn95ss - 1
- 6
- 2
Dedup errors if input BAM file is empty
#624 opened by IanSudbery - 3
Compilation fails on python 3.12
#627 opened by s-andrews - 2
umi_tools extract: UMI on 5' read 1 and 3' read 2
#623 opened by lzt5269 - 5
- 1
UMI-tools dedup and heavily soft-clipped CIGAR strings due to overlapping PE reads...
#621 opened by SJJHK - 4
- 4
question: umi_tools whitelist to recover barcodes in an amplicon sequencing experiment
#596 opened by MGordon09 - 4
- 4
Confused with the output "position" of group function
#603 opened by yinzhuo0322 - 4
How can use umi-tools for umi present on read1 and in both the end like 5' and 3' end?
#606 opened by unique379r - 2
prepare-for-rsem no longer works
#607 opened by anoronh4 - 6
- 4
geneset.gtf location
#613 opened by wwinnerhoo - 5
Best way to handle non-UMI labelled reads
#616 opened by kvn95ss - 4
UMIs lost after STAR alignment
#617 opened by asadatae - 2
umi extract
#618 opened by robinycfang - 3
- 4
AssertionError: files /scratch/tmpqkgmy2lv/stdout and tests/whitelist_umi_output.sam are not the same
#626 opened by vasquini - 2
- 2
- 0
- 2
umi_tools dedup with gene-tag on, how are those reads with "GN:Z:-" tag deduplicated?
#614 opened by MengjunWu - 2
Estimate sequencing error rate
#608 opened by phillipeloher - 2
Custom UMI Deduplication
#605 opened by jamesboot - 3
Deduplication of UMI on Read2 only
#599 opened by LeoVincenzi - 1
Extra UMI present only in R1 of read pair?
#595 opened by kmshort - 0
Wrong UMI extracted using Regex
#601 opened by NordinZandhuis - 1
Error : dedup' is not a UMI-tools command
#598 opened by mohamedbahru - 2
- 2
umi_tools not working
#594 opened by gevro