s-andrews

The Babraham InstituteCambridge, UK

Pinned Repositories

BamQC
Mapped QC analysis program
Language:Java41 10 188
celllinesleuth
A program to identify human cancer cell lines from NGS data
Language:Java1 3 61
FastQC
A quality control analysis tool for high throughput sequencing data
Language:Java425 13 12184
GOliath
A web based Gene Ontology searching and visualisation system
Language:Perl0 4 92
nextflow_pipelines
The set of NGS processing pipelines used at Babraham
Language:Nextflow9 5 1514
redotable
A dotplot application for DNA/RNA sequence
Language:Java10 3 181
SeqMonk
SeqMonk NGS visualisation and analysis tool
Language:Java47 10 2669
sradownloader
A script to make downloading of SRA/GEO data easier
Language:Python29 6 229
virusbreak
A web based game to simulate virus outbreaks
Language:JavaScript11 3 457
vistorydb
A web database for presenting SeqMonk vistories
Language:HTML0 3 00

s-andrews's Repositories

s-andrews/FastQC
A quality control analysis tool for high throughput sequencing data
Language:Java425 13 12184
s-andrews/sradownloader
A script to make downloading of SRA/GEO data easier
Language:Python29 6 229
s-andrews/nextflow_pipelines
The set of NGS processing pipelines used at Babraham
Language:Nextflow9 5 1514
s-andrews/sierra
A sequencing facility LIMS system
Language:Perl4 7 191
s-andrews/illuminaprocessing
The scripts for doing automated run processing from our sequencing facility
Language:Perl2 7 01
s-andrews/autosftp
An automated data transfer system
Language:Python1 2 11
s-andrews/bioinformaticsrates
A record of bioinformatics hourly rates for core facilities
Language:HTML1 2 01
s-andrews/canonicalsplicecount
A program to quantitate RNA-Seq data based on the presence of canonical splice sites
Language:Python1
s-andrews/dedupcheck
A quick and dirty check for duplicate files in a large filesystem
Language:Python1 2 0
s-andrews/proteostasis_gpt
A custom GPT for questions about proteostasis
Language:Python1 1 0
s-andrews/nexons
A pipeline for quantitating transcript level abundances from nanopore sequence data
Language:Python0 4 102
s-andrews/autoalign
A web based tool for aligning nanopore PCR fragment sequencing
Language:Python2 11
s-andrews/aws_training_images
A set of build scripts to generate AWS instances ready to run our training courses
Language:Shell3 121
s-andrews/beatbox
Analysis and visualisation of celluar beating patterns
Language:Java2 4
s-andrews/capstone_monitor
A system to monitor activity on the capstone cluster
Language:Python2 171
s-andrews/groupactivity
A web based system to record the activities undertaken by people in a group
Language:Python2 0
s-andrews/Labrador
A web based tool to manage and automate the processing of publicly available datasets.
Language:PHP3 0
s-andrews/Librarian
A tool to predict the sequencing library type from the base composition of a supplied FastQ file.
Language:Rust1 0
s-andrews/mqtemplate
A system to generate mqpar.xml files automatically
Language:Python
s-andrews/randomcoffee
A web interface for arranging random coffee meetings
Language:CSS3 0
s-andrews/replacementcircles
A program to identify mis-recombined VDJ sequences
Language:Python2 0
s-andrews/size_factor_demo
Code from the Bitesize Bioinformatics tutorial on size factor normalisation in R
Language:HTML2 0
s-andrews/species_specific_peptides
Code to generate stats and data on species specific peptides
2 0
s-andrews/symlink2text
A program to convert symlinks to text files
Language:Python2 0
s-andrews/TrAEL-seq
A collection of software for processing TrAEL-Seq data
Language:Python2 0
s-andrews/transposoncds
A program to find coding sequences in genomic transposons
Language:Python2 0
s-andrews/treeorme
An idea for our 2021 Christmas card
Language:Python
s-andrews/websystembase
A web based system to record the activities undertaken by people in a group
Language:Python2 0
s-andrews/whocanplay
A site to track availability of players for rehearsals and gigs.
Language:HTML
s-andrews/windmillcam
The capture code for the Burwell Museum windmill cam
Language:Python2 0