Pinned Repositories
BamQC
Mapped QC analysis program
celllinesleuth
A program to identify human cancer cell lines from NGS data
FastQC
A quality control analysis tool for high throughput sequencing data
GOliath
A web based Gene Ontology searching and visualisation system
nextflow_pipelines
The set of NGS processing pipelines used at Babraham
redotable
A dotplot application for DNA/RNA sequence
SeqMonk
SeqMonk NGS visualisation and analysis tool
sradownloader
A script to make downloading of SRA/GEO data easier
virusbreak
A web based game to simulate virus outbreaks
vistorydb
A web database for presenting SeqMonk vistories
s-andrews's Repositories
s-andrews/compter
An application to graphically summarise kmer enrichment in a set of sequences
s-andrews/christmas2020
The Babraham Bioinformatics 2020 Xmas Card
s-andrews/intensitydiff
An R package to perform the intensity difference statistical calculation
s-andrews/GOliath
A web based Gene Ontology searching and visualisation system
s-andrews/biases
analysis of biases
s-andrews/charades
An online system for playing charades
s-andrews/collabgraph
An interactive graph of academic collaborations
s-andrews/conclave
A data integration application for genomics
s-andrews/cyclewithme
A web site to plan group cycle rides
s-andrews/DisorderedMethylation
Code to calculate the level of disorder in bisulphite methylation patterns
s-andrews/fastqR
An R package to manipulate FastQ files
s-andrews/GEO-submissions
Information and code to help with GEO submissions
s-andrews/HiCUP
Hi-C data processing pipeline
s-andrews/jscameratest
A test to see whether we can capture static images from a web page
s-andrews/kpi
A KPI tracking system for bioinformatics
s-andrews/LipidFinder
LipidFinder: A computational workflow for discovery of new lipid molecular species
s-andrews/mandelbrot
A python mandelbot generator
s-andrews/musicdb
A web database to track pupils who play instruments through primary and secondary school
s-andrews/musicquiz
An online quiz about musicals
s-andrews/nobelR
An R package to query Nobel prize winners
s-andrews/notebookexercise
This is the final exercise from the Notebook taught session
s-andrews/posterquiz
Can you identify the musical from the poster?
s-andrews/propsquiz
A quiz about props in musicals
s-andrews/proteinR
An R package to model and maniupulate protein sequence
s-andrews/recordlogin
A small curses app which allows people who have succesfully logged in to record the fact
s-andrews/rolesquiz
A quiz to identify roles in musical theatre
s-andrews/sangr
An R package for simulating Sanger sequencing chromatograms
s-andrews/sra-tools
SRA Tools
s-andrews/subset10xbam
A tool to extract subsets of data from the tagged BAM file generated by CellRanger
s-andrews/three_prime_gtf
Some scripts to cut down genome annotation to 3' tags