Pinned Repositories
UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
EndHiC
EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to assemble large contigs into chromosomal-level scaffolds.
competitions
FOREWARN-AMR
A metagenomics pipeline for analyzing antimicrobial resistance developed for the FOREWARN project
Kraken2-output-manipulation
Kraken output generates a report for each datasets, this script takes these individual output and combines it to one file, where each column is number of reads that were rooted to this taxon (column 2 in summary)
misc-guides
Miscellaneous tutorials and guidelines
bacseq
hazmup's Repositories
hazmup/competitions
hazmup/FOREWARN-AMR
A metagenomics pipeline for analyzing antimicrobial resistance developed for the FOREWARN project
hazmup/Kraken2-output-manipulation
Kraken output generates a report for each datasets, this script takes these individual output and combines it to one file, where each column is number of reads that were rooted to this taxon (column 2 in summary)