A Snakemake workflow for environmental metagenomics antibiotic resistance analysis. This pipeline cleans up raw reads, classifies them and identifies antimicrobial resistance genes. More features to be added. Developed for the FOREWARN project http://www.waterjpi.eu/joint-calls/joint-call-2020-aquaticpollutants/aquaticpollutants-rdi-funded-projects-booklet/forewarn
hazmup/FOREWARN-AMR
A metagenomics pipeline for analyzing antimicrobial resistance developed for the FOREWARN project
Python