pandas module is deprecated
Closed this issue · 1 comments
Acribbs commented
I have noticed on a number of pipelines we are getting warnings that pandas modules are deprecated, specifically pandas.lib and pandas.core.datetools.
I think we should change pandas import statements so this doesn't happened, please see: yhat/ggpy#618
sebastian-luna-valero commented
Thanks @Acribbs
I am getting those as well, but looking deeper into them, this is caused by CGATReport, ggplot, and statsmodels:
/conda-install/envs/cgat-p/lib/python3.6/site-packages/CGATReport/DataTree.py:267: FutureWarning: '.reindex_axis' is deprecated and will be removed in a future version. Use '.reindex' instead.
/conda-install/envs/cgat-p/lib/python3.6/site-packages/ggplot/components/smoothers.py:4: FutureWarning: The pandas.lib module is deprecated and will be removed in a future version. These are private functions and can be accessed from pandas._libs.lib instead
/conda-install/envs/cgat-p/lib/python3.6/site-packages/statsmodels/compat/pandas.py:56: FutureWarning: The pandas.core.datetools module is deprecated and will be removed in a future version. Please use the pandas.tseries module instead.
So AFAIK, the refactoring should happen on those packages rather than in our pipelines. Presumably this will occur in new versions of those packages, and the FutureWarning will disappear after we upgrade our conda environments.
Will close but feel free to re-open if necessary.