ATGC content percentages don't make sense
Closed this issue · 2 comments
> actg <- atgcContent(filename="SRR1552450.fastq.gz") actg
A T G C N
[1,] 0 0.0083 0 0.0167 1.1167
These percentages don't add up to 100 or 1. Bug in atgcContent? Something weird in the data?
I don’t actually know what’s going on with that function. I would be tempted to remove that from the material.
From: Harriet Dashnow [mailto:notifications@github.com]
Sent: Friday, 13 May 2016 11:24 AM
To: COMBINE-Australia/RNAseq-R
Subject: [COMBINE-Australia/RNAseq-R] ATGC content percentages don't make sense (#14)
actg <- atgcContent(filename="SRR1552450.fastq.gz")
actg
A T G C N
[1,] 0 0.0083 0 0.0167 1.1167
These percentages don't add up to 100 or 1. Bug in atgcContent? Something weird in the data?
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