Feature request: read-level probabilities

Question

Feature request: read-level probabilities

Closed this issue 13 days ago · 4 comments

Thank you for developing Oarfish! I think it would be helpful to add an option to output read-transcript probabilities for downstream analysis. Would it be possible to implement this in a future update? Thank you!

Answer 1 · 2024-10-31T20:15:10.000Z

Thanks @andyjslee. @zzare-umd & @NPSDC --- this should be pretty straightforward to implement, so lets try and get it implemented quickly. If one of you wants to take a stab, let me know. We can discuss exactly where the best place to put this would be.

Answer 2 · 2024-11-06T16:08:09.000Z

Hi @andyjslee, we have a draft implementation of this now. We'll do a little more testing and then ask you to test it out if you're willing (before we merge it back into main).

Answer 3 · 2024-11-07T16:20:38.000Z

Hi @rob-p! Yes, I'd love to test it out! Thank you so much.

Answer 4 · 2024-11-14T16:28:41.000Z

This is not an option in v0.6.3, which was just released. Thanks for the idea @andyjslee and for testing it!