CRBS/cdeep3m

Issues

• prediction failed (octave error)

  #78 opened 4 years ago by jawonGim
  6

• How to input muti-channel label image,such as(width*height*channel) and How to use label_class_selection.prototxt

  #77 opened 5 years ago by TITC
  0

• HDF5 error with Ubuntu 18.04 LTE

  #57 opened 5 years ago by haberlmatt
  4

• dataset used in training

  #76 opened 5 years ago by krishnakatyal
  1

• How to obtain the training accuracy from the log file?

  #72 opened 5 years ago by cakuba
  4

• architecture used?

  #75 opened 5 years ago by krishnakatyal
  1

• 2D data

  #73 opened 5 years ago by albert597
  3

• /usr/bin/time not available on all systems

  #56 opened 5 years ago by coleslaw481
  0

• Error when running runprediction.sh on a local build. Any help is appreciated!

  #71 opened 5 years ago by camcondylis
  8

• Blank prediction results

  #69 opened 6 years ago by camcondylis
  1

• Add validation data to training failed

  #58 opened 6 years ago by cakuba
  3

• Using the pretrained model at /sbem/mitochrondria/xy5.9nm40nmz/30000iterations_train_out failed

  #54 opened 6 years ago by cakuba
  7

• caffepredict doesn't parrellelize properly

  #66 opened 6 years ago by MatthewBM
  1

• Watershed error

  #61 opened 6 years ago by MatthewBM
  2

• checkpoint_nobinary(imgstack)

  #64 opened 6 years ago by camcondylis
  14

• Unable to plot validation loss

  #65 opened 6 years ago by cakuba
  1

• Image binarization and exclusion zone

  #62 opened 6 years ago by cakuba
  4

• runprediction not working on local build

  #59 opened 6 years ago by JurgenKriel
  4

• Can we apply your model on different applications?

  #63 opened 6 years ago by Ayanzadeh93
  1

• preprocessing problem

  #60 opened 6 years ago by orinp
  3

• problems executing the example scripts

  #46 opened 6 years ago by damsport11
  21

• Add --gpu option to runprediction.sh

  #51 opened 6 years ago by coleslaw481
  1

• Modify cloudformation template to install IMOD

  #52 opened 6 years ago by coleslaw481
  1

• readme

  #50 opened 6 years ago by MatthewBM
  1

• Add --gpu option to runtraining.sh

  #48 opened 6 years ago by coleslaw481
  2

• --1fmonly flag causing error when used passed to runtraining.sh

  #47 opened 6 years ago by coleslaw481
  2

• EnsemblePredictions.m fails when called by runprediction.sh if there is only 1 model

  #49 opened 6 years ago by coleslaw481
  2

• Modify runprediction.sh to NOT delete png files under model directories

  #45 opened 6 years ago by coleslaw481
  1

• remove Pkg folders

  #43 opened 6 years ago by haberlmatt
  1

• Remove quotes around tail command printed to user in runprediction.sh

  #44 opened 6 years ago by coleslaw481
  1

• Script to determine effect of augmentation on accuracy

  #37 opened 7 years ago by haberlmatt
  0

• Add invocation to EnsemblePredictions.m for end of prediction

  #29 opened 7 years ago by coleslaw481
  1

• Remove augmented h5 files once they are predicted

  #40 opened 7 years ago by haberlmatt
  1

• Create script to parse out loss rate and other values from log files of prediction

  #34 opened 7 years ago by coleslaw481
  0

• Stitching

  #39 opened 7 years ago by haberlmatt
  0

• Switch runprediction.sh pipeline to augment data on the fly

  #36 opened 7 years ago by coleslaw481
  0

• Enable parallel training

  #38 opened 7 years ago by coleslaw481
  0

• Enable parallelism in prediction

  #33 opened 7 years ago by coleslaw481
  0

• update default number of iterations in runtraining.sh to 30000

  #31 opened 7 years ago by coleslaw481
  2

• Update runtraining.sh with custom flags to allow caller to adjust learning rate etc.

  #30 opened 7 years ago by coleslaw481
  1

• update prediction to run with less then 16 augmented variations of the data

  #32 opened 7 years ago by coleslaw481
  1

• Copy over VERSION file to train and predict jobs

  #35 opened 7 years ago by coleslaw481
  1

• Create or rename Create scripts

  #28 opened 7 years ago by coleslaw481
  1

• Merge_LargeData.m looks for de_augmentation_info.mat in fm directory

  #26 opened 7 years ago by coleslaw481
  2

• Add progress to run_all_predict.sh

  #22 opened 7 years ago by coleslaw481
  1

• Adding test data for users

  #27 opened 7 years ago by haberlmatt
  6

• Re organization of script files

  #24 opened 7 years ago by coleslaw481
  2

• augmentation de-augmentation mismatch

  #25 opened 7 years ago by haberlmatt
  1

• Questions about these .m file

  #23 opened 7 years ago by coleslaw481
  2

• uint8 vs single dataformat

  #21 opened 7 years ago by haberlmatt
  1