Pinned Repositories
candig-data-portal
A data analytics and visualization portal for V2 CanDIG services.
candig-server
The CanDIG V1 core application enabling data discovery and visualization for clinical & genomic data.
CanDIGv2
The CanDIG v2 platform
candigv2-ingest
Ingest microservice for CanDIGv2
clinical_ETL_code
A library to convert clinical data in csv format into json documents for CanDIG ingestion
federated-learning
For the development of differentially private federated machine learning on the CanDIG data services
htsget_app
Htsget API implementation based on the Htsget protocol
images_bakeoff
Test bundling of bwa, picard, and samtools in various image/container formats
katsu
MoHpackets based clinical metadata service for the CanDIG platform.
python_model_service
Example CanDIG service following best practices in python. API viewable at:
CanDIG's Repositories
CanDIG/federated-learning
For the development of differentially private federated machine learning on the CanDIG data services
CanDIG/tyk-kc-demo
A toy demo showing how to use Tyk to protect an API, denying access to it without an OIDC token from a Keycloak instance, and enforcing rate limiting
CanDIG/candigv2_opa
CanDIG/candig_compose
deploy the candig stack with compose
CanDIG/GraphQL-interface
CanDIG/infrastructure
DevOps and other infrastructure notes and tools
CanDIG/mesi-search
CanDIG/tyk-keycloak-starter-kit
A Tyk+Keycloak-based solution for secure full-stack web application deployment.
CanDIG/hostseq-variants-portal
HostSeq Variants Portal
CanDIG/1password-teams-open-source
Get a free 1Password Teams membership for your open source project
CanDIG/cancogen_dashboard
A React.js-based dashboard enabling data visualization via charts, tables & genomic browsers for CanCoGEN data.
CanDIG/CanCOGen_synthetic_data
CanDIG/CanCOGen_synthetic_variant_data
CanDIG/candig_search_service
CanDIG/chord_drs
PoC for data repository system based on GA4GH's specs for the Bento platform
CanDIG/hostseq-keycloak-14-theme
CanDIG/hostseq-portal-tyk-configs
CanDIG/hostseqportal-scripts
Hostseq portal scripts
CanDIG/id-translator-public
CanDIG/id3-variants-training
CanDIG/igv.js
The CanDIG fork of Integrative Genomics Viewer.
CanDIG/keycloak_configs
GSC Keycloak themes and config
CanDIG/metadata_service
Stand alone metadata service carved out from CanDIG v1.
CanDIG/metadata_service_v2
Metadata service for CanDIG v2
CanDIG/nginx-oidc-demo
Super simple demo showing how to use Nginx and Keycloak to protect an API
CanDIG/omop_service
The first prototype of the OMOP service based on the OMOP Common Data Model
CanDIG/PROFYLE_ingest
Routines for ingesting PROFYLE metadata into a GA4GH repository
CanDIG/PublicDocuments
CanDIG documents
CanDIG/rems-demo
Elixir REMS DAC Portal demo configuration and deployment
CanDIG/xlsx2csv-action