Pinned Repositories
candig-data-portal
A data analytics and visualization portal for V2 CanDIG services.
candig-server
The CanDIG V1 core application enabling data discovery and visualization for clinical & genomic data.
CanDIGv2
The CanDIG v2 platform
candigv2-ingest
Ingest microservice for CanDIGv2
clinical_ETL_code
A library to convert clinical data in csv format into json documents for CanDIG ingestion
federated-learning
For the development of differentially private federated machine learning on the CanDIG data services
htsget_app
Htsget API implementation based on the Htsget protocol
images_bakeoff
Test bundling of bwa, picard, and samtools in various image/container formats
katsu
MoHpackets based clinical metadata service for the CanDIG platform.
python_model_service
Example CanDIG service following best practices in python. API viewable at:
CanDIG's Repositories
CanDIG/CanDIGv2
The CanDIG v2 platform
CanDIG/python_model_service
Example CanDIG service following best practices in python. API viewable at:
CanDIG/candig-opa
Developing relevant rego policies for OPA CanDIGv2
CanDIG/candig.github.io
Website for the CanDIG project
CanDIG/candig_cnv_service
CanDIG/htsget_app
Htsget API implementation based on the Htsget protocol
CanDIG/candig-data-portal
A data analytics and visualization portal for V2 CanDIG services.
CanDIG/candig-schemas
Data models and API definitions
CanDIG/candig-server-external-dashboard
A React.js-based dashboard enabling data visualization for candig-server APIs.
CanDIG/candig_authz_service
CanDIG Authorization Service.
CanDIG/candigv2-ingest
Ingest microservice for CanDIGv2
CanDIG/GraphQL-interface
CanDIG/rnaget_service
Implementation of GA4GH rnaget API
CanDIG/clinical_ETL_code
A library to convert clinical data in csv format into json documents for CanDIG ingestion
CanDIG/federation_service
Microservice implementation of federation code from CanDIG v1 for CanDIG v2
CanDIG/katsu
MoHpackets based clinical metadata service for the CanDIG platform.
CanDIG/MOHCCN_clinical_data_model
Documents and issue tracker for the Marathon of Hope clinical data model
CanDIG/candig-ingest
A Python CLI utility enabling batch ingestion and update for candig-server.
CanDIG/candigv2-authx
Common CanDIGv2 authorization and authentication code
CanDIG/candigv2-logging
CanDIGv2 common logging methods
CanDIG/candigv2-query
CanDIG/datasets_service
Microservice implementation of dataset search services from CanDIG v1
CanDIG/github-action-pr-expanded
GitHub Action to Create Pull Request in Parent Repository when Submodules are Updated (Expanded)
CanDIG/mock-data-generator
CanDIG/mohccn-data
Synthetic test data for MOHCCN
CanDIG/mohccn-synthetic-data
A consistent synthetic dataset used for testing across the CanDIG stack.
CanDIG/normalize-ingest
PoC normalize-on-ingest pipeline using MinIO bucket notifications (webhooks) and Flask server/listener to trigger (CWL) workflows
CanDIG/redcap-cloud
a collection of files & scripts used for transferring clinical metadata from redcap cloud to CanDIG
CanDIG/repository-template
CanDIG repo template
CanDIG/service-registry