Clinical-Genomics/patientMatcher

Issues

• Build & Push to Docker Hub failing

  #345 opened a year ago by northwestwitch
  0

• remove many info logs

  #344 opened a year ago by northwestwitch
  0

• unfreeze PyMongo

  #337 opened a year ago by northwestwitch
  1

• Investigate why version >=4.5 is returning matching info with isodates instead of timestamps

  #342 opened a year ago by northwestwitch
  0

• Gunicorn worker not booting

  #341 opened a year ago by northwestwitch
  3

• Option to rename a connected node to something else

  #336 opened 2 years ago by northwestwitch
  0

• Create a simple command to view connected nodes and available clients

  #335 opened 2 years ago by northwestwitch
  0

• How to use docker image to run commands for interacting with the database

  #334 opened 2 years ago by northwestwitch
  1

• Modify node documents to include link to institute

  #333 opened 2 years ago by northwestwitch
  0

• Display connected details on landing page

  #325 opened 2 years ago by dnil
  2

• Gunicorn workers not loading

  #330 opened 2 years ago by northwestwitch
  1

• Newest resource file not correctly parsed

  #327 opened 2 years ago by northwestwitch
  1

• Broken badge on readme page

  #324 opened 2 years ago by northwestwitch
  0

• Do not start the server if resource files can't be parsed properly

  #319 opened 2 years ago by northwestwitch
  0

• Deprecated Ubuntu version 18.04 in GitHub actions

  #317 opened 2 years ago by northwestwitch
  0

• Can't download phenotype_annotation.tab

  #318 opened 2 years ago by northwestwitch
  2

• Parsed 0 disease/phenotypes from resource file

  #313 opened 3 years ago by northwestwitch
  0

• Phenotype annotations link is not working any more

  #309 opened 3 years ago by northwestwitch
  0

• Add this repo to Sonarcloud

  #307 opened 3 years ago by northwestwitch
  3

• Update database (diagnoses and phenotypes) both for demo and prod instances

  #295 opened 3 years ago by northwestwitch
  1

• Docs link doesn't work

  #302 opened 3 years ago by northwestwitch
  1

• Move documentation to dedicated docs pages (mkdocs)

  #278 opened 3 years ago by northwestwitch
  0

• Wrong port serving the app in readme file

  #298 opened 3 years ago by northwestwitch
  0

• Remove asynchronous responses from server views

  #296 opened 3 years ago by northwestwitch
  0

• Create a config file with settings for codecov action v.2

  #289 opened 3 years ago by northwestwitch
  0

• cannot import name '_unicodefun' from 'click'

  #291 opened 3 years ago by northwestwitch
  0

• Codecov action v.1 got deprecated, switch to v.2

  #287 opened 3 years ago by northwestwitch
  0

• Add cite info on index page

  #283 opened 3 years ago by northwestwitch
  1

• Add favicon to index page

  #284 opened 3 years ago by northwestwitch
  0

• Modify references to point to our new paper

  #281 opened 3 years ago by northwestwitch
  1

• Add more info on crash report email, to understand which server has crashed (prod or stage)

  #279 opened 3 years ago by northwestwitch
  0

• Email notifications triggered by server errors are not tested

  #276 opened 3 years ago by northwestwitch
  1

• Flask-Mail is not sending emails even if the app states that notifications are sent

  #271 opened 3 years ago by northwestwitch
  0

• Env vars that are numbers are read as strings, causing bugs in patient matching

  #268 opened 3 years ago by northwestwitch
  0

• Change ALL tests that rely on internet services to use mock services

  #265 opened 3 years ago by northwestwitch
  0

• Speed up tests

  #258 opened 3 years ago by northwestwitch
  0

• Refactor cli options and params to be compliant with the GNU coding standards

  #251 opened 3 years ago by northwestwitch
  0

• Heartbeat should return True or False if instance is Prod or Stage

  #254 opened 3 years ago by northwestwitch
  0

• Include PatientMatcher version in matching emails sent to the users

  #242 opened 3 years ago by northwestwitch
  1

• Same number of matches sent and matches received in metrics

  #252 opened 3 years ago by northwestwitch
  0

• Prepare repo for installation on Server farm VM

  #237 opened 3 years ago by northwestwitch
  0

• Fix code to move the app on the VM

  #239 opened 3 years ago by northwestwitch
  1

• Deprecated werkzeug.contrib error with werkzeug>=1.0.0

  #245 opened 3 years ago by northwestwitch
  1

• Freeze PyMongo to version < 4.0

  #243 opened 3 years ago by northwestwitch
  0

• Rename "master" branch to "main"

  #238 opened 3 years ago by northwestwitch
  2

• Introduce contact info (href) string validation

  #229 opened 3 years ago by northwestwitch
  0

• Reassign patients to another user.

  #228 opened 3 years ago by northwestwitch
  3

• Param missing in overridden FlaskGroup method

  #224 opened 3 years ago by northwestwitch
  0

• Test (and fix) connectivity to a MongoDB replica set

  #221 opened 3 years ago by northwestwitch
  0

• Change the Docker-compose and actions files to use a MongoDB version 4.4

  #218 opened 4 years ago by northwestwitch
  0