Pinned Repositories
CogStack-NiFi
Building data processing pipelines for documents processing with NLP using Apache NiFi and related services
CogStack-Pipeline
Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning
CogStack-SemEHR
Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
Foresight
Deep Generative Modelling of Patient Timelines using Electronic Health Records
MedCAT
Medical Concept Annotation Tool
MedCATservice
Running MedCAT as a RESTful web service
MedCATtrainer
A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
MedCATtutorials
General tutorials for the setup and use of MedCAT.
OpenGPT
A framework for creating grounded instruction based datasets and training conversational domain expert Large Language Models (LLMs).
tika-service
Apache Tika running as a web service
CogStack's Repositories
CogStack/MedCAT
Medical Concept Annotation Tool
CogStack/OpenGPT
A framework for creating grounded instruction based datasets and training conversational domain expert Large Language Models (LLMs).
CogStack/CogStack-SemEHR
Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
CogStack/MedCATtrainer
A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
CogStack/Foresight
Deep Generative Modelling of Patient Timelines using Electronic Health Records
CogStack/CogStack-NiFi
Building data processing pipelines for documents processing with NLP using Apache NiFi and related services
CogStack/MedCATtutorials
General tutorials for the setup and use of MedCAT.
CogStack/MedCATservice
Running MedCAT as a RESTful web service
CogStack/tika-service
Apache Tika running as a web service
CogStack/cogstack-nlp
CogStack NLP, including the Medical Concept Annotation Tool MedCAT
CogStack/working_with_cogstack
Basic setup and easy to follow templates to interact and search CogStack for data analysts
CogStack/nlp2phenome
using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)
CogStack/risk-score-builder
Map clinical risk score concepts to structured definitions using ontologies, calculate structured risk scores from NLP.
CogStack/ocr-service
CogStack/cogstack-jupyter-hub
Custom Jupyter Hub Docker image with example notebooks
CogStack/CogStack-PatientTimeline
A patient timeline browser build on-top of CogStack
CogStack/iCAT
A docker container for CogStack/MedCAT/HuggingFace development in isolated environments.
CogStack/AnonCATDemo
The Deidentify app uses MedCAT to automatically redact or replace sensitive information in documents. Customisable rules and batch processing make it easy to handle large datasets.
CogStack/cogstack-model-gateway
A Gateway for accessing Cogstack ModelServe instances
CogStack/CogStackCohort
A MedCAT annotations retrieval tool for cohort identification
CogStack/MedCAT2
MedCATv2
CogStack/MedCATv2tutorials
Tutorials for MedCATv2
CogStack/OAC-NLP
CogStack/texscrubber
Personal information de-identification tool
CogStack/CogStack-ModelServe
A model serving and governance system for CogStack NLP solutions
CogStack/.github
CogStack/cogstack-platform-toolkit
CogStack Platform-wide code, documentation and tooling.
CogStack/cogstack-rag-search
CogStack/MedCATdemowebapp
Demo web app for MedCAT
CogStack/text-2-sql