Pinned Repositories
CogStack-NiFi
Building data processing pipelines for documents processing with NLP using Apache NiFi and related services
CogStack-Pipeline
Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning
CogStack-SemEHR
Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
Foresight
Deep Generative Modelling of Patient Timelines using Electronic Health Records
MedCAT
Medical Concept Annotation Tool
MedCATservice
Running MedCAT as a RESTful web service
MedCATtrainer
A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
MedCATtutorials
General tutorials for the setup and use of MedCAT.
OpenGPT
A framework for creating grounded instruction based datasets and training conversational domain expert Large Language Models (LLMs).
tika-service
Apache Tika running as a web service
CogStack's Repositories
CogStack/MedCAT
Medical Concept Annotation Tool
CogStack/OpenGPT
A framework for creating grounded instruction based datasets and training conversational domain expert Large Language Models (LLMs).
CogStack/CogStack-SemEHR
Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
CogStack/MedCATtrainer
A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
CogStack/CogStack-Pipeline
Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning
CogStack/Foresight
Deep Generative Modelling of Patient Timelines using Electronic Health Records
CogStack/CogStack-NiFi
Building data processing pipelines for documents processing with NLP using Apache NiFi and related services
CogStack/MedCATtutorials
General tutorials for the setup and use of MedCAT.
CogStack/MedCATservice
Running MedCAT as a RESTful web service
CogStack/tika-service
Apache Tika running as a web service
CogStack/nlp2phenome
using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)
CogStack/working_with_cogstack
Basic setup and easy to follow templates to interact and search CogStack for data analysts
CogStack/cogstack-getting-started
Documentation for Deploying and Configuring CogStack
CogStack/CogStack-Trial
Trial Recruitment made easy by using CogStack and SemEHR
CogStack/ocr-service
CogStack/risk-score-builder
Map clinical risk score concepts to structured definitions using ontologies, calculate structured risk scores from NLP.
CogStack/CogStack-PatientTimeline
A patient timeline browser build on-top of CogStack
CogStack/annotations-ingester
Send text annotations back to ElasticSearch
CogStack/cogstack-jupyter-hub
Custom Jupyter Hub Docker image with example notebooks
CogStack/CogStackCohort
A MedCAT annotations retrieval tool for cohort identification
CogStack/gate-nlp-service
Running GATE NLP applications as RESTful web services
CogStack/iCAT
A docker container for CogStack/MedCAT/HuggingFace development in isolated environments.
CogStack/medcat-cogstack-workshop
CogStack/OAC-NLP
CogStack/texscrubber
Personal information de-identification tool
CogStack/AnonCATDemo
The Deidentify app uses MedCAT to automatically redact or replace sensitive information in documents. Customisable rules and batch processing make it easy to handle large datasets.
CogStack/CogStack-Recipes
Example deployment recipes based on CogStack
CogStack/CogStack-ModelServe
A model serving and governance system for CogStack NLP solutions
CogStack/glowing-bear-cogstack-demo
GlowingBear CogStack Demo