CogStack/MedCAT

Issues

• Hard coded SNOMED release file bug.

  #467 opened 4 months ago by antsh3k
  4

• ```cat.cdb.print_stats()``` returns empty

  #464 opened 4 months ago by LWserenic
  10

• Writing SNOMED dataframe - cannot access local variable in preprocess_snomed file

  #428 opened 6 months ago by saskia-lawson-tovey
  4

• How to use SNOMED trained model

  #410 opened 7 months ago by aylee2008
  4

• Service unavailable

  #409 opened 8 months ago by AmgadHasan
  4

• MedCAT model used in validation

  #379 opened a year ago by tomseinen
  3

• Stopwords do not load properly

  #382 opened a year ago by jenniferjiangkells
  4

• How do I download the models?

  #387 opened a year ago by nklsbckmnn
  3

• Error: [E050] when trying to load sample annotate entity project

  #378 opened a year ago by yzfr6
  0

• Install MedCAT with pytorch cpu

  #358 opened a year ago by jenniferjiangkells
  2

• Concept not found if token order is slightly changed contrary to mentioned note in paper

  #344 opened a year ago by KimBenjaminTang
  3

• new install attempt with SNOMED model throws spacy/thinc config validation error

  #293 opened 2 years ago by ryleyb
  4

• Model resources no longer available.

  #339 opened a year ago by plandes
  4

• i am running NER-L tutorial but while running this cell, model and dataset are not downloading.

  #338 opened a year ago by vaidikcs
  1

• TypeError: Snomed._refset_df2dict() takes 1 positional argument but 2 were given

  #340 opened a year ago by andreacortis
  1

• Modifing the weights of words in the models

  #335 opened a year ago by SeonggwanAhn
  3

• Show nested ents results in error

  #325 opened a year ago by jkgenser
  2

• Add contributor guidelines

  #159 opened 2 years ago by w-is-h
  3

• Upgrade spacy dependency

  #256 opened 2 years ago by louni-g
  3

• remove elasticsearch dependency

  #297 opened 2 years ago by FMelloMascarenhas-Cohere
  5

• Version 1.6.1 is not on pypi

  #292 opened 2 years ago by Zethson
  1

• How to use CUI filtering

  #290 opened 2 years ago by sandertan
  0

• Loosen dependency constraints

  #288 opened 2 years ago by Zethson
  1

• Complete UML model download

  #235 opened 2 years ago by analyticalpicasso
  1

• Warning: The CDB was exported by an unknown version of MedCAT.

  #253 opened 2 years ago by plandes
  9

• Dependencies for 3.0 with scispacy

  #251 opened 2 years ago by plandes
  4

• Turning on spelling and abbreviations

  #252 opened 2 years ago by plandes
  1

• Remove logging handlers from MedCAT

  #241 opened 2 years ago by zack-kimble
  2

• Exact text value

  #238 opened 3 years ago by samjsramirez
  1

• create_model_pack creates directories recursively rather than storing model pack in the path

  #237 opened 3 years ago by Imipenem
  3

• Prebuild snomed model

  #233 opened 3 years ago by analyticalpicasso
  2

• MedCat fails to correctly detect enumerations of (negative) diagnoses

  #230 opened 3 years ago by Imipenem
  4

• Creation of CAT object fails with: Can't find model 'en_core_sci_lg'.

  #227 opened 3 years ago by Imipenem
  4

• Should Timestamp be a Document property not a Relationship property?

  #210 opened 3 years ago by jthteo
  0

• medcat.utils.preprocess_snomed.Snomed - FileNotFoundError

  #198 opened 3 years ago by KeironO
  5

• [Question] Language availability

  #179 opened 3 years ago by IKetchup
  2

• New spacy models not compatible with spacy < 3.1.0

  #174 opened 3 years ago by w-is-h
  0

• MedCAT model creator

  #116 opened 3 years ago by sandertan
  1

• Make cdb.config argument an optional parameter

  #170 opened 3 years ago by kawsarnoor
  0

• make GPU parameter for metacat models

  #171 opened 3 years ago by kawsarnoor
  0

• Tutorials also need an update for new Word2Vec parameter names, e.g. size to vector_size:

  #157 opened 3 years ago by w-is-h
  1

• Check multi argument logs

  #162 opened 3 years ago by w-is-h
  0

• Naming of TUI / type_ids column

  #138 opened 3 years ago by sandertan
  2

• Use MetaCAT.save() with auto_save

  #153 opened 3 years ago by sandertan
  2

• 4.3 tutorial fails due to missing config.json file

  #152 opened 3 years ago by Zethson
  5

• Add support for more abbreviations

  #148 opened 3 years ago by Zethson
  2

• FileNotFoundError: [Errno 2] No such file or directory: 'mc_status/config.json'

  #147 opened 3 years ago by deakkon
  2

• Upgrade SpaCy dependencies

  #145 opened 3 years ago by Zethson
  1

• Discerning between was found and was not found

  #119 opened 3 years ago by Zethson
  6

• Handling of words containing diacritics

  #117 opened 3 years ago by sandertan
  2