Pinned Repositories
Benisse
scBCR and GEX
bootstrap
The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.
caffe2
Caffe2 is a lightweight, modular, and scalable deep learning framework.
cellassign
Automated, probabilistic assignment of cell types in scRNA-seq data
Concerto-reproducibility
cs231n.github.io
Public facing notes page
ctdna-pipeline
A simplified pipeline for ctDNA sequencing data analysis
D2
Speed virtual screening by 50X
Deconvolution2016
Code and manuscript files for Aaron and Karsten's deconvolution paper.
Deep-Docking-NonAutomated
Coke-Zhang's Repositories
Coke-Zhang/bootstrap
The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.
Coke-Zhang/caffe2
Caffe2 is a lightweight, modular, and scalable deep learning framework.
Coke-Zhang/ctdna-pipeline
A simplified pipeline for ctDNA sequencing data analysis
Coke-Zhang/Deconvolution2016
Code and manuscript files for Aaron and Karsten's deconvolution paper.
Coke-Zhang/DESeq2
Differential gene expression analysis based on the negative binomial distribution
Coke-Zhang/FurtherNorm2018
Code for further development of the summation-based scaling normalization method, as implemented in the scran package.
Coke-Zhang/gco_python
Python wrappers for GCO alpha-expansion and alpha-beta-swaps
Coke-Zhang/networkx
Official NetworkX source code repository.
Coke-Zhang/novosparc
Coke-Zhang/ohmyzsh
🙃 A delightful community-driven (with nearly 1,500 contributors) framework for managing your zsh configuration. Includes 200+ optional plugins (rails, git, OSX, hub, capistrano, brew, ant, php, python, etc), over 140 themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.
Coke-Zhang/Paradigm
PAthway Representation and Analysis by Direct Inference on Graphical Models
Coke-Zhang/sccaf_example
The examples, data preprocessing and benchmark on parameters
Coke-Zhang/scGCO
Single-cell graph cuts optimization
Coke-Zhang/scprep
A collection of scripts and tools for loading, processing, and handling single cell data.
Coke-Zhang/scRNA
Coke-Zhang/scRNA-seq-pipelines
Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
Coke-Zhang/seurat
R toolkit for single cell genomics
Coke-Zhang/single-cell-rna-seq
A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
Coke-Zhang/Slideseq
Coke-Zhang/SPARK
Spatially resolved transcriptomic analysis
Coke-Zhang/SPARK-Analysis
spatially resolved data analysis
Coke-Zhang/SpatialDE
Test genes for Spatial Variation
Coke-Zhang/splatter
Simple simulation of single-cell RNA sequencing data
Coke-Zhang/Splotch
Coke-Zhang/st_analysis
A toolkit for visualisation and analysis of Spatial Transcriptomics datasets
Coke-Zhang/st_pipeline
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
Coke-Zhang/taggd
Genetic barcode demultiplexing
Coke-Zhang/trendsceek
Identify genes with spatial expression trends in single-cell gene expression data