Coke-Zhang

Computational Biology

CASShanghai, China

Pinned Repositories

Benisse
scBCR and GEX
Language:Python0 1 00
bootstrap
The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.
Language:CSS00
caffe2
Caffe2 is a lightweight, modular, and scalable deep learning framework.
Language:C++00
cellassign
Automated, probabilistic assignment of cell types in scRNA-seq data
Language:R0 1 00
Concerto-reproducibility
Language:Jupyter Notebook00
cs231n.github.io
Public facing notes page
Language:Jupyter Notebook00
ctdna-pipeline
A simplified pipeline for ctDNA sequencing data analysis
Language:Shell00
D2
Speed virtual screening by 50X
Language:Python00
Deconvolution2016
Code and manuscript files for Aaron and Karsten's deconvolution paper.
Language:TeX00
Deep-Docking-NonAutomated
Language:Python00

Coke-Zhang's Repositories

Coke-Zhang/Benisse
scBCR and GEX
Language:Python0 1 00
Coke-Zhang/cellassign
Automated, probabilistic assignment of cell types in scRNA-seq data
Language:R0 1 00
Coke-Zhang/Concerto-reproducibility
Language:Jupyter Notebook00
Coke-Zhang/cs231n.github.io
Public facing notes page
Language:Jupyter Notebook00
Coke-Zhang/D2
Speed virtual screening by 50X
Language:Python00
Coke-Zhang/Deep-Docking-NonAutomated
Language:Python00
Coke-Zhang/DeepVS
Boosting Docking-Based Virtual Screening with Deep Learning
Coke-Zhang/dogs_vs_cats
猫狗大战
Coke-Zhang/dynbenchmark
Comparison of methods for trajectory inference on single-cell data 🥇
Language:R0 0
Coke-Zhang/emt_dynamics
Scripts used for "Comparing transcriptional dynamics of the epithelial-mesenchymal transition"
Coke-Zhang/garnett
Automated cell type classification
Coke-Zhang/gnina
A deep learning framework for molecular docking
Language:C++1 0
Coke-Zhang/GPcounts
Coke-Zhang/hta
Language:Python1 0
Coke-Zhang/hummus
Code associated with generating figures from Richardson & Binter et al, 2022.
Language:Jupyter Notebook0 0
Coke-Zhang/IRkernel
R kernel for Jupyter
Coke-Zhang/PaddleViT
:robot: PaddleViT: State-of-the-art Visual Transformer and MLP Models for PaddlePaddle 2.0+
Coke-Zhang/paga
Mapping out the coarse-grained connectivity structures of complex manifolds.
Coke-Zhang/Python-100-Days
Python - 100天从新手到大师
Coke-Zhang/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
Coke-Zhang/sccaf
Single-Cell Clustering Assessment Framework
Language:Jupyter Notebook1 0
Coke-Zhang/sceasy
A package to help convert different single-cell data formats to each other
Coke-Zhang/scGCO-1
Single-cell Graph Cuts Optimization
Language:Jupyter Notebook1 0
Coke-Zhang/scMouseBcellFlu
Coke-Zhang/single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
Coke-Zhang/SJARACNe
Scalable Tool for Gene Network Reverse Engineering
Language:C++1 0
Coke-Zhang/STAR
RNA-seq aligner
Coke-Zhang/tbsp
Trajectory Inference Based on SNP information.
Coke-Zhang/umap
Uniform Manifold Approximation and Projection
Coke-Zhang/zUMIs
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
Language:R1 0