Pinned Repositories
alignment_zebrafish
A jupyter notebook to help align slices acquired from MALDI imaging to a reference (manual alignment, using ipywidgets, or semi-automated registration, with itk-elastix).
analysis_filling_scheme
collider-dashboard
A Dash application to visualize the observables and parameters of a collider built and configured with Xsuite.
CouplingHMM
Project code: Low-dimensional Dynamics of Two Coupled Biological Oscillators (Nature Physics paper)
CZViz
A Python Dash application to explore rhythmic circadian zonation data.
D3-Fourier
Fourier animation with D3.js
Jupyter-notebooks
A list of notebooks corresponding to the posts made on my blog.
lbae
The Lipid Brain Atlas Explorer is a Python Dash web-application developed to assist the inspection and the analysis of a large mass-spectrometry dataset of lipids brain distribution.
PhaseInferenceReview
Julia implementation of different methods used for phase inference
zenodo-explorer
Made with ❤️ by Carlos, Colas and Diogo for the CERN webfest (hackathon) 2022: 1st prize winners!
ColasDroin's Repositories
ColasDroin/lbae
The Lipid Brain Atlas Explorer is a Python Dash web-application developed to assist the inspection and the analysis of a large mass-spectrometry dataset of lipids brain distribution.
ColasDroin/zenodo-explorer
Made with ❤️ by Carlos, Colas and Diogo for the CERN webfest (hackathon) 2022: 1st prize winners!
ColasDroin/collider-dashboard
A Dash application to visualize the observables and parameters of a collider built and configured with Xsuite.
ColasDroin/CZViz
A Python Dash application to explore rhythmic circadian zonation data.
ColasDroin/alignment_zebrafish
A jupyter notebook to help align slices acquired from MALDI imaging to a reference (manual alignment, using ipywidgets, or semi-automated registration, with itk-elastix).
ColasDroin/analysis_filling_scheme
ColasDroin/colasdroin.github.io
My personal page, built with React, Mantine and P5.js
ColasDroin/build_collider
ColasDroin/colasdroin
ColasDroin/collider_check
A small package that provides functions to check the observables in a collider, using a collider built with Xsuite.
ColasDroin/comparison_pymask_xmask
An exhaustive comparison of pymask and xmask, to ensure machines built with both collider configuration managers are identical.
ColasDroin/CZViz-webpage
A small webpage to host the CZViz Python Dash app
ColasDroin/DA_IPAC_2024
ColasDroin/DA_parametrization_run_4
ColasDroin/DA_study
A repository used for dynamic aperture simulations of the High-Luminosity LHC
ColasDroin/DA_study_for_bologna_cluster
A repository used for dynamic aperture simulations of the High-Luminosity LHC, adapted for the High Performance Computing clusters at INFN-CNAF
ColasDroin/example_DA_study
Dynamics aperture study boilerplate
ColasDroin/LHC_dash
A small Python Dash app to interactively explore the LHC layout.
ColasDroin/Lie_transformation
Small Python module to generate the Hamiltonian for a given multipole order, and find the Lie transformation accordingly.
ColasDroin/minimal_qrcode_example
ColasDroin/portrait_of_a_lakes_death
Geospatial hackathon first prize winners (Colas, Carlos and Diana)
ColasDroin/study-gen
ColasDroin/study-sub
ColasDroin/study_RDT
ColasDroin/tree_maker
ColasDroin/xmask
Collider configuration manager
ColasDroin/xmask_DA_study_before_upgrade
A repository used for dynamic aperture simulations of the High-Luminosity LHC, upgraded to work with x-mask (but luminosity levelling and bunch-by-bunch simulations not available yet)
ColasDroin/xmask_tutorial
A step-by-step Jupyter notebook tutorial on how to use Xmask (collider configuration manager of Xsuite)
ColasDroin/xsuite
Suite of python packages for multiparticle simulations of particle accelerators.
ColasDroin/xtrack
Python package for tracking simulations in particle accelerators on CPU and GPU.