/alignment_zebrafish

A jupyter notebook to help align slices acquired from MALDI imaging to a reference (manual alignment, using ipywidgets, or semi-automated registration, with itk-elastix).

Primary LanguageJupyter Notebook

alignment_zebrafish

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A notebook to align slices acquired from MALDI imaging to a reference (manual alignment, using ipywidgets, or semi-automated registration, with itk-elastix). Voxels can then be clustered according to their expression.

Reference not in the data, available here.