Pinned Repositories
bionode-fastq
Streamable FASTQ parser
gnumap
GNUMAP: Genomic Next-generation Universal MAPper version 4.0
cole-doom-emacs
My private customizations to Doom Emacs.
gozette
A Micropub server written in Go, primarily designed for static sites.
kleuren
Find bubbles in the Colored de Bruijn Graph to reconstruct phylogenetic trees
kleuren-scipipe-workflow
A scipipe workflow for building the necessary data structures for running kleuren.
kcollections
An efficient kmer data structure for genomic applications.
Colelyman's Repositories
Colelyman/gozette
A Micropub server written in Go, primarily designed for static sites.
Colelyman/kleuren
Find bubbles in the Colored de Bruijn Graph to reconstruct phylogenetic trees
Colelyman/cole-doom-emacs
My private customizations to Doom Emacs.
Colelyman/org-show
A simple Emacs package to give presentations directly from org-mode.
Colelyman/org-zettelkasten
Another Zettelkasten implementation using the power of Org-mode.
Colelyman/tilde.el
A very tiny emacs config
Colelyman/tome
A pollen based content management system. A cross between a blog, zettle-kasten, and wiki.
Colelyman/bioconda-recipes
Conda recipes for the bioconda channel.
Colelyman/BloomFilterTrie
An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.
Colelyman/bug-free-disco
Colelyman/cl-kleuren
Finding bubbles in the Colored de Bruijn Graph.
Colelyman/colelyman-hugo
My personal Hugo website.
Colelyman/colelyman.com
Personal website for Cole Lyman, using parallax.
Colelyman/CRISPResso2
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
Colelyman/cs501r-final-project
Colelyman/DeblurGAN
Image Deblurring using Generative Adversarial Networks
Colelyman/hugograyscale
A multi-section single page theme intended as a landing page. This is derived from the startbootstrap-grayscale theme.
Colelyman/indieweb-lanyon-hugo
Port of poole/lanyon, to spf13/hugo
Colelyman/jinja_partials
Simple reuse of partial HTML page templates in the Jinja template language for Python web frameworks. #pypackage
Colelyman/kcollections-example
Colelyman/last
A bare bones static site generator using make and pandoc.
Colelyman/markdown
Markdown parser written in Racket.
Colelyman/racket-rash
The Reckless Racket Shell
Colelyman/slideshow
Colelyman/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Colelyman/subtree_example_child
An example of how to use git subtree (this is the subtree).
Colelyman/subtree_example_parent
An example of how to use git subtree.
Colelyman/thenotepad
📓🍎An experimental blog written in Pollen / Racket
Colelyman/tiddlywiki
My attempt at Zettlekasten
Colelyman/yuck
Yuck is a local-search constraint solver with FlatZinc interface