CovertLab/arrow

Issues

• Name conflict with Jupyter dependency

  #51 opened a year ago by thalassemia
  9

• Arrow hangs wcEcoli complexation with certain sim seeds

  #48 opened 3 years ago by 1fish2
  6

• Release versioning

  #21 opened 3 years ago by jmason42
  2

• add a memory leak test

  #38 opened 6 years ago by 1fish2
  2

• Python 3 compatibility [as needed by wcEcoli]

  #40 opened 3 years ago by 1fish2
  0

• consistent install even if installing numpy at the same time?

  #46 opened 4 years ago by 1fish2
  0

• Negative counts from StochasticSystem

  #39 opened 5 years ago by tahorst
  5

• Facilitating user-provided propensity calculations

  #34 opened 6 years ago by heejochoi
  5

• Accelerating performance

  #31 opened 6 years ago by jmason42
  2

• Store reaction dependencies for efficient propensity recalculation

  #14 opened 6 years ago by jmason42
  1

• Switching between stochastic and ODE-based simulation

  #30 opened 6 years ago by eagmon
  2

• Compare sparse vs. full matrix representations

  #8 opened 6 years ago by jmason42
  4

• Suspend alternative propensity calculation 'form's

  #27 opened 6 years ago by jmason42
  2

• Profiling utilities and routine profiling

  #24 opened 6 years ago by jmason42
  3

• Edge case: catalysts

  #26 opened 6 years ago by jmason42
  0

• Standardize output order and nomenclature

  #10 opened 6 years ago by jmason42
  3

• Optionally return the number of times each event occurred

  #12 opened 6 years ago by jmason42
  2

• Cast time, counts to NumPy arrays after simulating

  #16 opened 6 years ago by jmason42
  1

• Transpose stoichiometry matrix

  #19 opened 6 years ago by jmason42
  3

• E. coli WCM complexation test system

  #9 opened 6 years ago by jmason42
  5

• Adopt spaces over tabs

  #17 opened 6 years ago by jmason42
  2

• Moving distribution plots

  #3 opened 6 years ago by jmason42
  2

• Implement tau leaping

  #2 opened 6 years ago by jmason42
  4

• PRNG determinism

  #5 opened 6 years ago by jmason42
  4

• Classes for problem construction/interpretation

  #6 opened 6 years ago by jmason42
  2

• Document and contrast with other SSA packages

  #7 opened 6 years ago by jmason42
  1

• Test different approaches for exponentially distributed random number generation

  #15 opened 6 years ago by jmason42
  1

• Utility for converting kinetic rate constants to stochastic rate constants

  #13 opened 6 years ago by jmason42
  0

• Only return final state by default when running until a time

  #11 opened 6 years ago by jmason42
  0

• (Quasi) deterministic simulation option

  #4 opened 6 years ago by jmason42
  0