CriticalSci

CriticalSci's Stars

• gambalab/DREEP

  Drug Response Estimation from single-cell Expression Profiles

  Language:C++91

• stjude/ChIPseqSpikeInFree

  A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications

  Language:R3013

• yancychy/DiffChIPL

  Language:HTML4

• 10XGenomics/supernova

  10x Genomics Linked-Read Diploid De Novo Assembler

  Language:C++6426

• vierstralab/footprint-tools

  A toolset to analyze genomic footprinting data

  Language:C193

• alelagana/MM-PSN

  Multiple Myeloma Patient Similarity Network

  Language:Python35

• jsh58/Genrich

  Detecting sites of genomic enrichment

  Language:C18527

• dahn-zk/zsh-jupyter-kernel

  Z shell kernel for Jupyter Notebook

  Language:Python786

• jdidion/biotools

  A list of useful bioinformatics resources

  576167

• loosolab/TOBIAS

  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

  Language:Python18839

• hyulab/PINTS

  Language:Python123

• CshlSiepelLab/DENR

  Select the most actively transcribed transcript model using PRO-seq

  Language:R35

• tuxera/ntfs-3g

  NTFS-3G Safe Read/Write NTFS Driver

  Language:C943145

• LHentges/LanceOtron

  Language:Python225

• soimort/translate-shell

  :speech_balloon: Command-line translator using Google Translate, Bing Translator, Yandex.Translate, etc.

  Language:Awk6.9k389

• zwang-bioinformatics/GOGO

  An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms

  Language:Perl176

• Ayllonbe/gsan

  Language:Java4

• stefanofranzini/essHIC

  essHIC is a python module to compare HiC matrices by computing a metric distance between them

  Language:Python62

• ktan8/ModTect

  ModTect is a tool for identifying sites of RNA modifications that disrupts base-pairing using typical RNA-sequencing datasets

  Language:Python41

• ChristopherWilks/megadepth

  BigWig and BAM utilities

  Language:C++919

• jupyterlab/jupyterlab-git

  A Git extension for JupyterLab

  Language:TypeScript1.4k312

• meuleman/epilogos

  Methods for summarizing and visualizing multi-biosample functional genomic annotations

  Language:Python415

• genepattern/genepattern-notebook

  Platform for integrating genomic analysis with Jupyter Notebooks.

  Language:Python4412

• deeptools/pyGenomeTracks

  python module to plot beautiful and highly customizable genome browser tracks

  Language:Python755111

• GangCaoLab/CoolBox

  Jupyter notebook based genomic data visualization toolkit.

  Language:Python22437

• tylermorganwall/rayshader

  R Package for 2D and 3D mapping and data visualization

  Language:R2k211

• HillLab/SomaticSiMu

  SomaticSiMu generates single and double base pair substitutions, and single base pair insertions and deletions of biologically representative mutation signature probabilities and combinations.

  Language:Python62

• ay-lab/mustache

  Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation

  Language:Python6111

• koszullab/chromosight

  Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps

  Language:Python619

• clinicalml/ml_mmrf

  Machine Learning with data from the Multiple Myeloma Research Foundation

  Language:Jupyter Notebook8