DKFZ-ODCF/nf-bam2fastq

Issues

• Singularity ignored, if "lsf" profile is used

  #58 opened 10 months ago by vinjana
  0

• Migrate to DSL2

  #56 opened 10 months ago by vinjana
  0

• Unaligned interleaved CRAM output

  #55 opened a year ago by vinjana
  0

• Unaligned single-end CRAM output

  #54 opened a year ago by vinjana
  0

• CRAM input support

  #27 opened 4 years ago by vinjana
  0

• Fix Singularity container startup

  #52 opened a year ago by vinjana
  1

• `reuse` for license management

  #53 opened a year ago by vinjana
  0

• Deploy container to Github Registry

  #13 opened 3 years ago by vinjana
  0

• Set job names (LSF)

  #26 opened 3 years ago by vinjana
  1

• Improve CI

  #20 opened 3 years ago by vinjana
  0

• Update to biobambam 2.0.177+

  #22 opened 3 years ago by vinjana
  1

• Add integration test

  #2 opened 3 years ago by vinjana
  1

• Implement CI

  #16 opened 3 years ago by vinjana
  0

• Add test-bams

  #11 opened 3 years ago by vinjana
  0

• Test paired-end branch with unpaired BAM

  #1 opened 3 years ago by vinjana
  0

• Create container-definitions

  #4 opened 3 years ago by vinjana
  0

• Turning on tracing with singularity reports missing `ps` command

  #8 opened 3 years ago by vinjana
  0

• Fix compression parameter logic

  #15 opened 3 years ago by vinjana
  0

• Either drop Picard altogether, or clean the code up

  #10 opened 3 years ago by vinjana
  1

• CircleCI seemst to fail first time on new branch

  #50 opened 3 years ago by vinjana
  0

• Resource requirements

  #3 opened 4 years ago by vinjana
  0

• CI: Deploy container to registry

  #12 opened 4 years ago by vinjana
  0