singularity
There are 613 repositories under singularity topic.
nextflow-io/nextflow
A DSL for data-driven computational pipelines
apptainer/singularity
Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.
apptainer/apptainer
Apptainer: Application containers for Linux
NVIDIA/hpc-container-maker
HPC Container Maker
pharmai/plip
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
glotzerlab/hoomd-blue
Molecular dynamics and Monte Carlo soft matter simulation on GPUs.
getpopper/popper
Container-native task automation engine.
Azure/batch-shipyard
Simplify HPC and Batch workloads on Azure
singularityhub/docker2singularity
A docker image for converting docker images to singularity images.
StaPH-B/docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
SciLifeLab/Sarek
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
sylabs/wlm-operator
Singularity implementation of k8s operator for interacting with SLURM.
x11vnc/x11vnc-desktop
Docker/Singularity image for Ubuntu with X11 and VNC
sylabs/singularity-cri
The Singularity implementation of the Kubernetes Container Runtime Interface
bdusell/singularity-tutorial
Tutorial for using Singularity containers
singularityhub/singularity-hpc
Local filesystem registry for containers (intended for HPC) using Lmod or Environment Modules. Works for users and admins.
singularityhub/sregistry
server for storage and management of singularity images
netreconlab/parse-hipaa
HIPAA & GDPR compliant ready parse-server with postgres/mongo, parse-hipaa-dashboard. Compatible with ParseCareKit
JuliaContainerization/SimpleContainerGenerator.jl
Create container images for using Julia packages (especially useful in environments without Internet access)
giesselmann/nanopype
Snakemake pipelines for nanopore sequencing data archiving and processing
biocorecrg/master_of_pores
Nextflow pipeline for analysis of direct RNA Nanopore reads
Barsonax/Singularity
A extremely fast ioc container for high performance applications
singularityhub/singularity-compose
orchestration for singularity containers (under development)
singularityhub/github-ci
An example GitHub Action (CI) to build a Singularity container
connectomicslab/connectomemapper3
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
genepi/nf-gwas
A nextflow pipeline to perform state-of-the-art genome-wide association studies.
singularityhub/singularity-cli
streamlined singularity python client (spython) for singularity
PangzeCheung/SingDiffusion
[CVPR 2024] Tackling the Singularities at the Endpoints of Time Intervals in Diffusion Models
sigven/gvanno
Generic human DNA variant annotation pipeline
brighill/singularity-deepin
Singularity容器运行微信
a-ludi/dentist
Close assembly gaps using long-reads at high accuracy.
vsoch/forward
Port Forwarding Utility
dgruber/wfl
A Simple Way of Creating Job Workflows in Go running in Processes, Containers, Tasks, Pods, or Jobs
JasonYangShadow/lpmx
A novel composable rootless container system
dirkpetersen/hpc-containers
You should offer both Podman and Apptainer with name spaces on your HPC systems
dz333n/Singularity-OS
Microsoft Research Singularity RDK 2.0 Source