a-ludi/dentist

Issues

• Example fails with Colon expected after keyword global_conda. (Snakefile, line 103)

  #43 opened 8 months ago by faulk-lab
  4

• Dentist parameters

  #42 opened 2 years ago by aureliendejode
  3

• Rerun after stop due to time limit

  #41 opened 2 years ago by aureliendejode
  4

• Error in rule validate_regions_block

  #38 opened 2 years ago by HouYan20
  2

• one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!

  #39 opened 2 years ago by plnspineda
  3

• Error: File stdout.fasta, Line 1: First header in fasta file is missing

  #40 opened 2 years ago by aureliendejode
  2

• No joined contigs with greedy configuration

  #37 opened 2 years ago by YannDussert
  2

• Can gaps be filled with just extension reads?

  #35 opened 2 years ago by lautimothy
  5

• md5checksum shows example dataset analysis fails

  #13 opened 4 years ago by RishiDeKayne
  12

• Setting dentist parameters

  #22 opened 4 years ago by Adamtaranto
  21

• `subprocess.run` got an unexpected keyword argument 'text'

  #36 opened 2 years ago by Duda5
  4

• Conda-install-error

  #34 opened 2 years ago by XingnuoLi1996
  9

• Singularity image is lacking a Python installation

  #30 opened 2 years ago by a-ludi
  4

• no gap-filling in "scaffold" mode?

  #33 opened 3 years ago by schraderL
  11

• example failing due to computeintrinsicqv

  #32 opened 3 years ago by schraderL
  3

• Could not create pipe to check startup of child (Too many open files)

  #31 opened 3 years ago by lucabianco78
  2

• rule mask_self fails on Docker container

  #29 opened 3 years ago by lucasnell
  3

• Math error in Snakefile

  #28 opened 3 years ago by cbirbes
  2

• Pacbio header line format error

  #27 opened 3 years ago by JonEilers
  16

• md5checksum differences between nodes

  #26 opened 3 years ago by diego-rt
  9

• MissingOutputException error

  #25 opened 3 years ago by shri1984
  1

• Error in rule `collect`

  #17 opened 3 years ago by muffato
  10

• Missing half of output files from test run

  #19 opened 3 years ago by rotoke
  19

• Failed to run with test data set: TypeError in line 45 of Snakefile

  #24 opened 4 years ago by davidjstudholme
  6

• Broken symlinks and/or missing files from data test set

  #21 opened 4 years ago by davidjstudholme
  3

• Missing Snakefile from example test dataset

  #23 opened 4 years ago by davidjstudholme
  8

• Adding haplotigs back for gap filling?

  #20 opened 4 years ago by rotoke
  3

• Nanopore reads

  #1 opened 5 years ago by mccartneya90
  3

• Questions about Input Reads

  #9 opened 4 years ago by cassondranewman
  6

• 'Wildcards' object has no attribute 'memory'

  #10 opened 4 years ago by cassondranewman
  2

• Getting started

  #12 opened 4 years ago by A-J-F-Mackintosh
  6

• Snakefile: Line 334, dbsplit doesn't recognize the "-T" option

  #2 opened 5 years ago by BradleyRan
  1

• Snakefile calls to LAcheck in shell sections fail

  #3 opened 5 years ago by BradleyRan
  6

• Syntax issue in snakemake

  #4 opened 5 years ago by harish0201
  3

• dentist collect v1.0.0-beta.3 requires DAScover from DASCRUBBER which failed to compile.

  #8 opened 4 years ago by BradleyRan
  2

• DALIGNER version

  #14 opened 4 years ago by EdHarry
  4

• LAsort fails in dailgner2.0

  #5 opened 4 years ago by a-ludi
  2

• File locking blocks indefinitely in `writePileUps`

  #6 opened 4 years ago by a-ludi
  15

• Damapper command fails

  #7 opened 4 years ago by olekto
  7

• FATAL: Unable to handle docker://aludi/dentist:v1.0.1 uri

  #15 opened 4 years ago by marcelauliano
  6

• Rule `ref_vs_reads_alignment_block` keeps failing

  #16 opened 4 years ago by a-ludi
  7

• Singularity issue

  #11 opened 4 years ago by DRL
  3