Pinned Repositories
doh-sml1303.github.io
genomic_epi
A collection of miscellaneous scripts for Genomic Epidemiology purposes
ncov
Nextstrain build for novel coronavirus SARS-CoV-2
ncov-wa-build
Augur build for Washington SARS-CoV-2 sequences.
pathogen-repo-guide
Washington state SARS-CoV-2 focused pathogen-repo-guide from https://github.com/nextstrain/pathogen-repo-guide
viral-genomics-workshop
wa_mpxv
Files for WA-Focused mpxv nextstrain build
wa_mpxv_old
WA-focused config files for mpxv nextstrain
wa_sc2
WA-focused build for ncov Nextstrain
wastewater_surveillance
Scripts to analyze wastewater sequencing data from Freyja pipeline and create files used as input for Data-Flo/Microreact Dashboard
DOH-SML1303's Repositories
DOH-SML1303/genomic_epi
A collection of miscellaneous scripts for Genomic Epidemiology purposes
DOH-SML1303/ncov
Nextstrain build for novel coronavirus SARS-CoV-2
DOH-SML1303/ncov-wa-build
Augur build for Washington SARS-CoV-2 sequences.
DOH-SML1303/pathogen-repo-guide
Washington state SARS-CoV-2 focused pathogen-repo-guide from https://github.com/nextstrain/pathogen-repo-guide
DOH-SML1303/wa_mpxv
Files for WA-Focused mpxv nextstrain build
DOH-SML1303/wa_ncov_profile
DOH-SML1303/wa_omicron
DOH-SML1303/wa_sc2
WA-focused build for ncov Nextstrain
DOH-SML1303/wastewater_surveillance
Scripts to analyze wastewater sequencing data from Freyja pipeline and create files used as input for Data-Flo/Microreact Dashboard