DOH-SML1303

DOH-SML1303's Stars

• andersonbrito/subsampler

  Language:Python134

• mbhall88/bioscripts

  Collection of scripts for doing various tasks

  Language:Python51

• tseemann/snp-dists

  Pairwise SNP distance matrix from a FASTA sequence alignment

  Language:C12828

• nextstrain/mumps

  Nextstrain build for mumps virus

  Language:Python25

• cbg-ethz/V-pipe

  V-pipe is a pipeline designed for analysing NGS data of short viral genomes

  Language:Jupyter Notebook13447

• nextstrain/fauna

  RethinkDB database to support real-time virus analysis

  Language:Python3313

• evogytis/baltic

  baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).

  Language:Python9629

• blab/mumps-wa-phylodynamics

  Repeated introductions and intensive community transmission fueled a mumps virus outbreak in Washington State

  Language:Jupyter Notebook3

• lh3/minimap2

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

  Language:C1.9k424

• snake-flu/datafunk

  Miscellaneous data manipulation tools

  Language:Python92

• andersen-lab/bjorn

  Language:Python214

• MSQ-123/CovidMutations

  A feasible framework for analysing SARS-CoV-2 mutations and validate your RT-PCR assays!

  Language:R42

• nextstrain/ncov-ingest

  A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.

  Language:Python3620

• nextstrain/augur

  Pipeline components for real-time phylodynamic analysis

  Language:Python269128

• nextstrain/auspice

  Web app for visualizing pathogen evolution

  Language:JavaScript296163

• nextstrain/nextclade

  Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

  Language:Rust22261

• StaPH-B/staph-b.github.io

  Visit the site here: https://staphb.org

  Language:SCSS71

• google/styleguide

  Style guides for Google-originated open-source projects

  Language:HTML37.7k13.3k

• CDCgov/SARS-CoV-2_Sequencing

  A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.

  Language:Perl34884

• Homebrew/brew

  🍺 The missing package manager for macOS (or Linux)

  Language:Ruby42.1k9.9k

• wesm/pydata-book

  Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media

  Language:Jupyter Notebook22.5k15.3k