DRL/kinfin

Issues

• What is the file corresponding to [orthofinder] in the 'generate_kinfin_input.py' script?

  #52 opened 2 months ago by PleniumJS
  0

• plot_cluster_size and generate_network .py errors

  #49 opened 7 months ago by aebaci
  3

• Error in iprs2table.py

  #48 opened 7 months ago by aebaci
  9

• Error in sanitise proteins step

  #46 opened 7 months ago by aebaci
  4

• Config File with TAXID or other labels

  #32 opened 2 years ago by agcmartins
  3

• functional_annotation_of_clusters.py ValueError

  #27 opened 2 years ago by martbrob
  1

• interproscan.sh can not work!!!

  #31 opened 2 years ago by yuzhenpeng
  4

• I have a problen to run Kinfin

  #37 opened 2 years ago by icruz1989
  4

• can't run kinfin

  #38 opened 2 years ago by pnatsi
  2

• Installation error: No module named 'pip.req'

  #40 opened 2 years ago by ggavelis
  2

• Installation error: No module named 'pip.req'

  #42 opened 2 years ago by starise-wg
  2

• installation and running error

  #44 opened 2 years ago by glmaala
  1

• Protein | in clustering belongs to proteomes that are not present in the SpeciesClassification-file

  #43 opened 3 years ago by Rob-murphys
  1

• plot_cluster_size_distribution.py

  #36 opened 6 years ago by Yixiangzhang1996
  1

• Need to explicitly import stats from scipy

  #41 opened 4 years ago by mbarkdull
  1

• meet problem on "no attribute '__getitem__'"

  #39 opened 5 years ago by JohnnyChen1113
  1

• generate_network.py error

  #33 opened 6 years ago by agcmartins
  2

• generate_network.py

  #23 opened 7 years ago by clydeandforth
  3

• Error writing output files

  #35 opened 6 years ago by stephenrdoyle
  1

• install error

  #34 opened 6 years ago by jas1717
  0

• get_count_matrix error

  #29 opened 7 years ago by evolgenomology
  4

• enrichment/depletion of one TAXON against all other TAXON

  #25 opened 7 years ago by wdermauw
  1

• 20801 Killed

  #28 opened 7 years ago by evolgenomology
  1

• generate_kinfin_input.py doesn't recognise .fa

  #26 opened 7 years ago by lstevens17
  2

• Can't produce the SequenceIDs file

  #24 opened 7 years ago by dcopetti
  3

• filter_fastas_before_clustering.py

  #22 opened 7 years ago by clydeandforth
  2

• functional_annotation

  #21 opened 7 years ago by BenjaminSchwessinger
  3

• get_count_matrix.py

  #20 opened 7 years ago by duncanberger
  1

• Image for README

  #19 opened 7 years ago by DRL
  0

• Trinity headers causing hickup

  #14 opened 7 years ago by evolgenomology
  0

• Proteins in clustering belong to proteomes

  #15 opened 8 years ago by evolgenomology
  1

• no output when setting -t

  #13 opened 8 years ago by evolgenomology
  9

• structure of SpeciesClassification.txt

  #12 opened 8 years ago by evolgenomology
  4

• Missing licensing information

  #1 opened 8 years ago by peterjc
  1