Pinned Repositories
100-Days-Of-ML-Code
100 Days of ML Coding
2019Bio.Script.Test
come on！
asexual-lineage-adaptation
Matlab code for simulations and inference of DFE (distribution of fitness effects) described in "The fates of mutant lineages and the distribution of fitness effects of beneficial mutations in laboratory budding yeast populations" EM Frenkel, BH Good, MM Desai. Genetics, 2014
atlas
ATLAS - Three commands to start analysing your metagenome data
bwa-mem2
The next version of bwa-mem (WIP; not recommended for production uses at the moment)
Circos
learning
microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
Primer3-MIsa
Genome/EST（fasta format）
Qiime16sTutorial
A tutorial on methods of 16S analysis with QIIME 1
Yixiangzhang1996's Repositories
Yixiangzhang1996/2019Bio.Script.Test
come on！
Yixiangzhang1996/microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
Yixiangzhang1996/100-Days-Of-ML-Code
100 Days of ML Coding
Yixiangzhang1996/atlas
ATLAS - Three commands to start analysing your metagenome data
Yixiangzhang1996/bwa-mem2
The next version of bwa-mem (WIP; not recommended for production uses at the moment)
Yixiangzhang1996/cv
My pagedown rendered CV
Yixiangzhang1996/devtools
Tools to make an R developer's life easier
Yixiangzhang1996/DISCVRSeq
A collection of command line tools for working with sequencing data
Yixiangzhang1996/docs
Source repository for https://docs.qiime2.org
Yixiangzhang1996/ergatis
Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines.
Yixiangzhang1996/FEAST
Fast expectation maximization for microbial source tracking
Yixiangzhang1996/LTR_FINDER_parallel
A parallel wrapper for LTR_FINDER
Yixiangzhang1996/LTR_retriever
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
Yixiangzhang1996/MBPD
Yixiangzhang1996/MitoZ
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
Yixiangzhang1996/MuSiCal
A comprehensive toolkit for mutational signature analysis
Yixiangzhang1996/peddy
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
Yixiangzhang1996/PIRATE
A toolbox for pangenome analysis and threshold evaluation.
Yixiangzhang1996/pyecharts
🎨 Python Echarts Plotting Library
Yixiangzhang1996/pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
Yixiangzhang1996/rgi
Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
Yixiangzhang1996/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
Yixiangzhang1996/selene
a framework for training sequence-level deep learning networks
Yixiangzhang1996/SemiBin
Yixiangzhang1996/socks5_list
Auto-updated SOCKS5 proxy list + proxies for Telegram
Yixiangzhang1996/thefuck
Magnificent app which corrects your previous console command.
Yixiangzhang1996/Timema_asex_genomes
Code for "Convergent consequences of parthenogenesis on stick insect genomes" manuscript
Yixiangzhang1996/tutorials
Tutorials on phylogenetic and phylogenomic inference
Yixiangzhang1996/UpSetPlot
Draw UpSet plots with Matplotlib
Yixiangzhang1996/wtdbg2
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly