DISCVR-seq Toolkit is a diverse collection of tools for working with sequencing data, developed and maintained by the Bimber Lab, built using the GATK4 engine. The set of tools is analogous to GATK or Picard. A description of all software produced by the Bimber Lab can be found here.
Please view our documentation for more information about the set of tools and usage.
DISCVR-seq Toolkit is a java program distributed as a single JAR. You can download the latest JAR from our release page. Running tools is analogous to GATK4.
While we recommend our documentation to learn about available tools and options, one can also view a list of tools and/or arguments from the command line:
# List available tools:
java -jar DISCVRseq.jar --list
# View arguments for a specific tool (VariantQC in this example):
java -jar DISCVRseq.jar VariantQC --help