DamCB/tyssue

Issues

• new release?

  #276 opened 2 months ago by Pablo1990
  4

• Using T1 Transitions instead of reconnect?

  #282 opened 10 months ago by sniffo
  3

• ENH: meshio export

  #221 opened 10 months ago by glyg
  6

• ENH: pass column name to `data_at_opposite`

  #245 opened 10 months ago by glyg
  0

• `ax` argument not considered in `tyssue.plt_draw.sheet_view`

  #258 opened 10 months ago by glyg
  0

• ENH: write mean_srce, mean_trgt etc. functions

  #224 opened 10 months ago by glyg
  0

• Use collision solver change QS result

  #262 opened 10 months ago by sophietheis
  9

• History.retrieve() efficiency. Any workarounds?

  #273 opened 10 months ago by sniffo
  10

• Improved History recording efficiency - no more exponential run-time increase possibly

  #275 opened 10 months ago by sniffo
  7

• Cell division failed for cell at the border

  #261 opened 10 months ago by sophietheis
  0

• QSsolver find energy min always return success is False

  #272 opened a year ago by sophietheis
  2

• Pandas 2.0 incompatibility - df.append removed

  #271 opened a year ago by sniffo
  4

• Definition of ux, uy

  #270 opened 2 years ago by Lepinja666
  2

• Faces become deformed and can overlap

  #269 opened 2 years ago by Lepinja666
  3

• Prevent a print when setting up specs

  #268 opened 2 years ago by Lepinja666
  5

• Value out of range for T1 transition (ValueError, KeyError) - Periodic sheet

  #265 opened 2 years ago by Lepinja666
  2

• Cannot scale periodic boundary sheet

  #266 opened 2 years ago by Lepinja666
  4

• T1 Transitions and Collision - Quasistatic and Viscous Solvers

  #211 opened 2 years ago by sniffo
  6

• Functionality to avoid self-intersections and edges intersecting each other?

  #219 opened 2 years ago by sniffo
  2

• Has anyone else thought of applying viscous/frictional forces in the energy min implementation? We are currently allowing large deformations to occur instantaneously. In the literature, this class of models is termed active vertex models.

  #199 opened 2 years ago by gcourcou
  10

• tyssue doc site is down

  #267 opened 2 years ago by kephale
  4

• napari integration

  #259 opened 2 years ago by kephale
  13

• Planar periodic sheet

  #260 opened 2 years ago by Lepinja666
  13

• Rearrangement (T1&T3) with QS Solver

  #257 opened 2 years ago by sophietheis
  6

• Last version of pandas (1.3.5) not working with Tyssue

  #256 opened 2 years ago by sophietheis
  4

• Create gif

  #255 opened 2 years ago by vlachina
  1

• release v1.0

  #253 opened 3 years ago by glyg
  0

• Random addition of vertices fails for internal cells

  #252 opened 3 years ago by jonathan-f
  6

• Bug encountered while running "sheet_from_cell_centers" function on points generated using from "sheet_from_cell_centers"

  #251 opened 3 years ago by sniffo
  2

• Bug in HistoryHDF5

  #249 opened 3 years ago by glyg
  0

• Introducing holes or removing a patch of cells from within a tissue

  #220 opened 4 years ago by sniffo
  16

• Has anybody successfully implemented constriction with the viscous solver?

  #246 opened 3 years ago by btbest
  5

• Counting T1 transitions

  #239 opened 4 years ago by glyg
  21

• BIUG upcast does not preserve dims if argument is an np.ndarray

  #236 opened 4 years ago by glyg
  0

• use precomputed relative positions

  #235 opened 4 years ago by glyg
  0

• area_grad does not return unit vectors

  #237 opened 4 years ago by btbest
  4

• Question Regarding Formulation for Area Elasticity, Perimeter Elasticity, and Line Tension

  #233 opened 4 years ago by sniffo
  3

• Changing parameters over-time in the viscous solver?

  #232 opened 4 years ago by sniffo
  4

• Some issue with ucoords in 0.8.1

  #229 opened 4 years ago by btbest
  6

• `spec_updater` does not add new element

  #226 opened 4 years ago by sophietheis
  0

• ENH: array / callable `"visible"` spec

  #223 opened 4 years ago by glyg
  0

• Manually Setting Coordinates for Vertices

  #216 opened 4 years ago by sniffo
  2

• Problem with link to Bibtex

  #218 opened 4 years ago by BenitoJG
  2

• ENH: Save all by default in history

  #209 opened 4 years ago by glyg
  0

• Force inference does not work

  #212 opened 4 years ago by sophietheis
  0

• hard coded values in `relax` action

  #210 opened 4 years ago by glyg
  3

• HistoryHDF5 can store a time point twice

  #203 opened 4 years ago by glyg
  0

• Cannot reindex from duplicate axis when running extract_bounding_box on sheet from history

  #200 opened 4 years ago by sophietheis
  3

• Use the same dt parameter in viscous solver and sheet.settings

  #201 opened 4 years ago by sophietheis
  1

• Add option so that face_rotations output can have Nf rotations

  #197 opened 4 years ago by glyg
  2