/hpv-viz

Visualization of uploaded VCF files used to show variant change over time

Primary LanguageTypeScript

VCF Visualization

Overview

Visualization of uploaded VCF files used to show variant change over time. This is can be useful when observing a viral genome (e.g. HPV) that may record variant types & sublineages that are drastically different in between recorded times.

Development

$ git clone https://github.com/DavidStreid/hpv-viz.git
$ npm install
$ npm run start # App should now be started at localhost:4200

Dev Notes

Install Dependencies hpv -> Project:hpv-viz

  1. Build all dependencies
$ npm run hpv-viz
  1. Build or run
$ npm run start
# OR
$ npm run build

Technologies

This uses the ngx-charts library.

Demo

To check out this project, check out http://davidstreid.com/#/data/vcf alt text