Pinned Repositories
1000GenomesViz
Visualization of Mitochondrial DNA Mutation Data from 1000 Genomes
Adafruit_Motor_Shield_V2_Library
v2!
alleleCount
Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings)
analytics
ANAPNEO
Greek / verb / I Breathe
AnapneoMobile
Anapneo App for Mobile Development
bamkit
Tools for common BAM file manipulations
bio_docker
Collection of docker images containing bioinformatic tools
biodata
Public Bioinformatics APIs monitor
jwt-in-cookie
Wrapper around the functionality of "jsonwebtoken" to easily set and validate JWT tokens via http cookies
DavidStreid's Repositories
DavidStreid/jwt-in-cookie
Wrapper around the functionality of "jsonwebtoken" to easily set and validate JWT tokens via http cookies
DavidStreid/alleleCount
Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings)
DavidStreid/ANAPNEO
Greek / verb / I Breathe
DavidStreid/bamkit
Tools for common BAM file manipulations
DavidStreid/bio_docker
Collection of docker images containing bioinformatic tools
DavidStreid/biodata
Public Bioinformatics APIs monitor
DavidStreid/bioinformatics
Bioinformatic Scripts
DavidStreid/bioinformaticScripts
scripts for biomaRT
DavidStreid/cdot
Transcript versions for HGVS libraries
DavidStreid/CellRangerParser
Parses cell ranger data
DavidStreid/DataStructures
Data Structures
DavidStreid/fastq-compression
Test of compression ratio and speed of popular generic compression algorithms
DavidStreid/flask-react-app
Simple Flask Server
DavidStreid/hello-world-docker-action
Testing Docker Container Action
DavidStreid/hpv-viz
Visualization of uploaded VCF files used to show variant change over time
DavidStreid/lsf-bioinformatics
Personal LSF pipeline helper
DavidStreid/lumpy-sv
lumpy: a general probabilistic framework for structural variant discovery
DavidStreid/markdown_readme
Markdown - you can mark up titles, lists, tables, etc., in a much cleaner, readable and accurate way if you do it with HTML.
DavidStreid/metagenome_analyzer
Shows how a parsed metagenome
DavidStreid/nextflow_patterns
Repo of patterns in nextflow
DavidStreid/nf-core-tools
Python package with helper tools for the nf-core community.
DavidStreid/node-api
Simple setup of a node api that can be installed in ng's project directory
DavidStreid/nodeServer_docker
Node Server with Docker Deployment
DavidStreid/object-modal
Modal that updates based on an input object
DavidStreid/react-webpack-babel
Reference for configuring react w/ babel
DavidStreid/scripts
hodgepodge of code
DavidStreid/svtyper
Bayesian genotyper for structural variants
DavidStreid/UNCE_Processing
Download of Processing of UNCE database of non-coding ultraconserved coding elements
DavidStreid/variant-call-format-parser
Parser of genetic data from Variant Call Format files
DavidStreid/viral-profiler
Application that analyzes sequencing data taken from viral-infected subjects