DavidStreid

DavidStreid's Stars

• spmallick/learnopencv

  Learn OpenCV : C++ and Python Examples

  Language:Jupyter Notebook21.2k88431911.6k

• navdeep-G/samplemod

  Language:Python4.8k10801.5k

• google/deepvariant

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  Language:Python3.2k156835724

• lh3/bwa

  Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

  Language:C1.5k107308556

• igvteam/igv.js

  Embeddable genomic visualization component based on the Integrative Genomics Viewer

  Language:HTML642341.2k229

• Illumina/SpliceAI

  A deep learning-based tool to identify splice variants

  Language:Python40721138158

• predibase/llm_distillation_playbook

  Best practices for distilling large language models.

  Language:Jupyter Notebook38512029

• pcingola/SnpEff

  Language:Java2512650581

• brentp/smoove

  structural variant calling and genotyping with existing tools, but, smoothly.

  Language:Go2341123921

• opencb/opencga

  An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company Zetta Genomics. Please contact support@zettagenomics.com for bug report and feature requests.

  Language:Java166301.5k97

• dgretton/pyhamilton

  Python for Hamilton liquid handling robots

  Language:Python156211338

• davetang/learning_vcf_file

  Learning the Variant Call Format

  Language:Perl13710240

• opencb/cellbase

  High-Performance NoSQL database and RESTful web services to access to most relevant biological data

  Language:Java892942153

• statgen/bamUtil

  Language:C++89175329

• stefanholek/lazy

  Lazy attributes for Python objects

  Language:Python524610

• opencb/biodata

  Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics

  Language:Java291915234

• SACGF/cdot

  Transcript versions for HGVS libraries

  Language:Python292825

• naumanjaved/fingerprint_maps

  Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of functional genomic data.

  Language:Python24569

• mskcc/igo-demux

  Demultiplex Illumina sequencer output via DRAGEN, create fastq files and launch pipelines

  Language:Python65230

• supernifty/fastqsplit

  rapidly split gzipped fastq files on lane

  Language:Go5203

• brentp/svtyper

  Bayesian genotyper for structural variants

  Language:Python3501

• mskcc/igo-qc

  Language:HTML33390

• DavidStreid/jwt-in-cookie

  Wrapper around the functionality of "jsonwebtoken" to easily set and validate JWT tokens via http cookies

  Language:JavaScript2201

• sirgallo/KeyValStore

  A generic, in memory key-value store written in Node.js. Basically just a project to experiment with different tooling

  Language:TypeScript2100

• sirgallo/rdb

  A distributed, fault tolerant database written in Go

  Language:Go2130

• sphussey/intellistat

  Statistical package designed to appropriately apply relevant statistical tests for users

  Language:Python117

• sphussey/pythonpackage-intelliprocess-DS-5010

  A python package for data preprocessing madae as a project for the course DS 5010

  Language:Python100