igvteam/igv.js

Issues

• How do I add a gene track for hg19?

  #1921 opened a month ago by dexon9109
  1

• TypeError when running removeBrowser

  #1918 opened a month ago by bartcharbon
  2

• No data for chrX and chrY for GRCh37

  #1912 opened 2 months ago by 1pratham
  10

• TypeError: Cannot read properties of undefined (reading 'startsWith') in v3+

  #1913 opened 2 months ago by lpryszcz
  0

• Broken hs1 genome config in 3.0.7 pre-built

  #1911 opened 2 months ago by guillaumecharbonnier
  1

• HtsgetReader should not send HTSGet ticket server headers in data server requests

  #1908 opened 2 months ago by andaca
  0

• Color by base modification resets Group by tag

  #1877 opened 2 months ago by northwestwitch
  2

• `flanking` argument isn't applied to the locus when `search` parameter is also supplied

  #1892 opened 2 months ago by audsc
  11

• Losing labels when zoom in/out

  #1898 opened 2 months ago by felipefahrion
  8

• Variant Track Custom change between V2 and v3

  #1903 opened 2 months ago by jpofmars
  6

• Locus search is case-sensitive in 3.0

  #1904 opened 2 months ago by ajw725
  1

• Variant tracks not displaying useful information

  #1902 opened 3 months ago by rponte-ionis
  3

• Make igv.js work with TypeScript: Add TypeScript API description

  #1846 opened 6 months ago by eternal-flame-AD
  9

• Float tags in BAM files interpreted incorrectly

  #1901 opened 3 months ago by Ally-Vella
  4

• Hub missing cytoband

  #1900 opened 3 months ago by Kahl84
  7

• No different colors in 5C methylation representation

  #1895 opened 3 months ago by vyx-lucy-kaplun
  14

• Save Image does not work when an Alignment track is grouped

  #1886 opened 3 months ago by milandomazet
  10

• Shift of -1bp in insertions displayed on igv.js

  #1889 opened 3 months ago by gemmabv
  4

• turning autoHeight = true requires users to set the track height twice using the gear icon

  #1897 opened 3 months ago by edlynhaynes
  1

• Issue in RefSeq reference

  #1893 opened 3 months ago by aardes
  3

• Can't see any alignments on "M" chromosome when using chromosome alias tab files

  #1896 opened 4 months ago by northwestwitch
  2

• IGV gene locus not updated with new gene's name (GBA1 vs. GBA)

  #1891 opened 4 months ago by yaarau
  1

• CORS policy for hg19_alias.tab

  #1887 opened 4 months ago by youknow16
  6

• Question: Testing and data-testid for elements

  #1882 opened 4 months ago by PeterKnealeCMRI
  2

• Loading from dropbx url is slow

  #1883 opened 4 months ago by aardes
  5

• contrib: devcontainer config

  #1881 opened 4 months ago by PeterKnealeCMRI
  5

• Cannot access resources on https://s3.amazonaws.com/igv.org.genome

  #1885 opened 4 months ago by northwestwitch
  5

• How can I get the search errors?

  #1879 opened 4 months ago by felipefahrion
  4

• Track gene name for v2.15.13

  #1878 opened 4 months ago by ozlem-sevri
  1

• IGV in a secondary tab does not show initially

  #1856 opened 5 months ago by VidJa
  5

• Baseline shift for spliceJunction tracks?

  #1863 opened 5 months ago by dnil
  5

• Htsget Bam support broken since v2.9.0

  #1870 opened 5 months ago by jmgenomics
  7

• IGVweb not loading GFF compressed and index files when served from a server

  #1871 opened 5 months ago by r78v10a07
  13

• Issue with searching consecutive regions with .search() in same IGV browser since v3.0.0

  #1864 opened 5 months ago by efgstone
  3

• VariantTrack header.INFO undefined

  #1868 opened 5 months ago by nictru
  1

• ERROR: Cannot read properties of undefined (reading 'table')

  #1865 opened 5 months ago by nictru
  5

• Alignment coverage track base mismatch depth indicator missing

  #1860 opened 5 months ago by dnil
  3

• Sequence Track not using nucleotideColors creation option

  #1849 opened 6 months ago by eternal-flame-AD
  2

• Inquiry About Highlighting SNPs in IGV.js

  #1833 opened 6 months ago by yrjia1015
  16

• a lot of tracks are blank at first and only appear when you change the locus.

  #1848 opened 6 months ago by eternal-flame-AD
  3

• loadTracks example not working

  #1841 opened 6 months ago by mukamel-lab
  2

• customize a reference genome

  #1839 opened 6 months ago by faezehma
  0

• Add option to display alignments arranged 1 per line

  #1836 opened 6 months ago by jrobinso
  0

• Docs: Add `compressedIndexURL` and clarify `indexURL` behavior

  #1812 opened 6 months ago by fiskus
  5

• The YC tag in bam does not work and does not display the corresponding color

  #1811 opened 6 months ago by windforclouds
  5

• IGV renames "chromosome_1" to "omosome_1"

  #1832 opened 6 months ago by shelkmike
  3

• Issue with Loading Large GWAS Data Track in igv.js

  #1825 opened 7 months ago by yrjia1015
  6

• copy sequence from selected region as in IGV desktop

  #1814 opened 7 months ago by MiqG
  2

• Hide alignment tracks without reads for currently active reference

  #1809 opened 8 months ago by julibeg
  1

• The bedgraph file in line plot doesn't work the same as the IGV desktop

  #1808 opened 8 months ago by KingZop959
  2