Pinned Repositories
hic-straw
Command line and web utilities for reading .hic contact matrix files
igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
igv-docs
Markdown-based documentation website - IGV desktop application
igv-notebook
Module for embedding igv.js in an IPython notebook
igv-reports
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
igv-webapp
IGV Web App
igv.js
Embeddable genomic visualization component based on the Integrative Genomics Viewer
igv.js-flask
Example project for integrating igv.js and flask
juicebox.js
HiC contact matrix visualization
spacewalk
Spacewalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js and juicebox.js instances for rapid and intuitive visual comparison and interaction between 3D data and 1D genomic data.
igvteam's Repositories
igvteam/igv.js
Embeddable genomic visualization component based on the Integrative Genomics Viewer
igvteam/igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
igvteam/igv-reports
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
igvteam/igv-webapp
IGV Web App
igvteam/igv-notebook
Module for embedding igv.js in an IPython notebook
igvteam/igv.js-flask
Example project for integrating igv.js and flask
igvteam/juicebox.js
HiC contact matrix visualization
igvteam/spacewalk
Spacewalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js and juicebox.js instances for rapid and intuitive visual comparison and interaction between 3D data and 1D genomic data.
igvteam/hic-straw
Command line and web utilities for reading .hic contact matrix files
igvteam/igv-docs
Markdown-based documentation website - IGV desktop application
igvteam/igv-utils
igvteam/data-modal
A data resource browser and selector based on DataTables. Used by igv applications for selecting files from ENCODE and other data resources.
igvteam/igv.js-react
Example project for using igv.js with React
igvteam/juicebox-notebook
igvteam/juicebox-web
igvteam/circular-view
Wrapper class for JBrowse genomic circular view component
igvteam/igv-ui
UI components for igv.js and related projects
igvteam/circular-view-app
igvteam/igv-widgets
UI widgets for igvteam applications
igvteam/igv.js-docs
igvteam/bgzip
igvteam/cram-js
Read CRAM v3 and v2 in node or in the browser
igvteam/d4server
Prototype D4 server
igvteam/extractome
Creates an "extracted" genome assembly from a fasta + list of regions
igvteam/google-utils
igvteam/igv-electron
igvteam/igv-juicebox
Prototypes exploring potential igv.js <-> juicebox.js interactions.
igvteam/igv-webapp-docs
igvteam/shoebox
igvteam/swcproject
SpaceWalk CLI tool to convert legacy point-cloud and ensemble files to .sw format