igvteam/igv-reports

Issues

• Could you please tell me how I can obtain the hg19 reference track file?

  #122 opened 25 days ago by dexon9109
  2

• Multiple BAM files in --track-config json?

  #119 opened 3 months ago by phillip-richmond-alamya
  3

• Methylation viewing in igv-reports

  #116 opened 3 months ago by phillip-richmond-alamya
  9

• Specify attribute file

  #118 opened 3 months ago by evsru
  1

• libcurl ssl issue

  #94 opened a year ago by barslmn
  2

• create_report is not updating the info-columns flag when passing custom names

  #117 opened 4 months ago by projassanchez
  4

• Non ACTG Nucleotides

  #107 opened 5 months ago by StephanHolgerD
  11

• Only display subset of tracks for specific variant rows

  #114 opened 5 months ago by ErikEnsminger
  2

• Consider using CRAM format to reduce file size

  #70 opened 5 months ago by jrobinso
  1

• Tracks no longer show in html files

  #101 opened 5 months ago by lauhinojosa
  7

• Change default track height for tracks supplied via --tracks

  #109 opened 5 months ago by phillip-richmond-umoja
  1

• Very slow to open with large BAM file sizes

  #113 opened 5 months ago by yolanda-y-li
  1

• Alignment File Report Possible from "downsamples BAM"

  #104 opened a year ago by jenzejoe2
  2

• Could not load local index file 'ncbiRefSeq.txt.gz.tbi'

  #103 opened a year ago by JunhuiLi1017
  1

• Error running with BED file

  #102 opened a year ago by andyjslee
  8

• Request overhang softclip sequence view in igv reports

  #66 opened 2 years ago by julie-asimov
  6

• filtering in HTML output?

  #87 opened a year ago by juntkym
  1

• Export all tracks to image file

  #78 opened a year ago by jaredbrewer
  1

• How to turn off downsampling option

  #86 opened a year ago by canna1998
  1

• fasta unrecognized

  #93 opened a year ago by mzwaig
  1

• Retain custom alignment colors from gff3

  #99 opened a year ago by drdna
  2

• Large structural variants not being fully captured in report tracks

  #100 opened a year ago by zbonnstetter
  4

• AttributeError: 'pysam.libcbcf.TabixIterator' object has no attribute 'append'

  #76 opened a year ago by lindenb
  2

• Non human reference genome

  #95 opened a year ago by erinyoung
  2

• KeyError: 'txt for input track

  #98 opened a year ago by MjelleLab
  2

• Problem with displaying the IDs from a GFF3 file

  #96 opened a year ago by dlbowie0
  0

• Alignment track whitespace

  #81 opened a year ago by ryanyord
  3

• Why is variant sites a mandatory input for igv-reports

  #75 opened a year ago by gopalpeddinti
  3

• converting the html to pdf

  #80 opened a year ago by laxvid
  3

• TypeError: a bytes-like object is required, not 'str'

  #79 opened a year ago by user-tq
  3

• create_report: error: unrecognized arguments: --zero-based false

  #92 opened a year ago by yunkaig
  1

• malposition of rows with tab and maf format input

  #88 opened a year ago by jcd-gh
  3

• HTML report too large

  #82 opened a year ago by abridgeland
  26

• Handshake failure error when used with Python 3.10

  #83 opened a year ago by ManavalanG
  1

• Change default display mode

  #71 opened 2 years ago by RaphaelHablesreiter
  1

• Copy Number Report

  #74 opened 2 years ago by osmanwa
  3

• INFO field parsing

  #72 opened 2 years ago by georgiesamaha
  3

• Option to filter/hide duplicate reads in igv-reports?

  #68 opened 2 years ago by satyakam001
  11

• Load file from private Google Cloud bucket

  #67 opened 2 years ago by DevangThakkar
  4

• Suggestion: add examples of output reports

  #62 opened 2 years ago by ameintjes
  1

• BEDPE support

  #63 opened 2 years ago by MJThiecke
  1

• Incorrect table headers for BED file variants

  #64 opened 2 years ago by DevangThakkar
  0

• Suggestion: add support for BCF files

  #55 opened 3 years ago by fgvieira
  2

• Down-sampling

  #61 opened 3 years ago by azbard
  1

• Is it possible to create read coverage density plot

  #60 opened 3 years ago by showteeth
  1

• Error when specifying URL in file for `--track-config`

  #59 opened 3 years ago by yeemey
  2

• Embedded igv-report array length error

  #58 opened 3 years ago by azbard
  4

• igv-reports doesn't display bam but igv does

  #57 opened 3 years ago by azbard
  6

• Input/output error when creating IGV report

  #53 opened 3 years ago by fgvieira
  7

• When the bam file (200 Mb) is big, it failed to load

  #54 opened 3 years ago by XuewenWangUGA
  4