Copy Number Report

[osmanwa]

Hi,

Could you tell me how to recreate this report:

https://igv.org/web/release/2.13.9/examples/copyNumber.html

from the igv.js repository with this cli tool?

I believe it only takes as input 1 file:

URL: https://s3.amazonaws.com/igv.org.demo/GBM-TP.seg.gz

Thanks

[jrobinso]

I'm confused by your question, that is not an "igv-report" its an example of embedding "igv.js", a separate project. See https://github.com/igvteam/igv.js.

igv-reports do not support "seq" copy number files.

[osmanwa]

Any chance it will anytime soon?

[jrobinso]

Not without some compelling use case.