Pinned Repositories
hic-straw
Command line and web utilities for reading .hic contact matrix files
igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
igv-docs
Markdown-based documentation website - IGV desktop application
igv-notebook
Module for embedding igv.js in an IPython notebook
igv-reports
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
igv-webapp
IGV Web App
igv.js
Embeddable genomic visualization component based on the Integrative Genomics Viewer
igv.js-flask
Example project for integrating igv.js and flask
juicebox.js
HiC contact matrix visualization
spacewalk
Spacewalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js and juicebox.js instances for rapid and intuitive visual comparison and interaction between 3D data and 1D genomic data.
igvteam's Repositories
igvteam/igv-ipad
IGV for iPad
igvteam/cursor
igvteam/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
igvteam/Juicebox
Visualization and analysis software for Hi-C data -
igvteam/sandbox
igvteam/test-utils
igvteam/vectorgraphics2d
Graphics2D implementations to export various vector file formats