igvteam/igv.js

Issues

• CRAM fetch size limit

  #1805 opened 8 months ago
  18

• Changing window function on wig track triggers data reload

  #1803 opened 6 months ago
  0

• Bigwig rendering difference in igv vs igv.js

  #1802 opened 6 months ago
  2

• Track axis limit label unusable when values are very low (<0.01)

  #1800 opened 8 months ago
  0

• igv.js styling breaks inside shadow DOM

  #1795 opened 8 months ago
  18

• Question about tracks loaded with the reference genome

  #1791 opened 6 months ago
  4

• Default cnvpytor track height

  #1789 opened 9 months ago
  4

• Missing chromosomes from chr10 to chr22 in cnvpytor track

  #1788 opened 9 months ago
  12

• Getting 416 Unsatisfiable Range upon zooming in

  #1785 opened 10 months ago
  2

• IGV.js 2.15.11 hangs at a specific genomic position

  #1784 opened 10 months ago
  1

• Unhandled Error in TrackViewport when scrolling

  #1779 opened 10 months ago
  2

• RangeError when loading a specific region on any chromosome in WGS analysis

  #1777 opened 10 months ago
  4

• Represent filter

  #1773 opened 6 months ago
  2

• Failed to use search from gtex portal

  #1771 opened 10 months ago
  6

• bam files not loading or not found

  #1770 opened 10 months ago
  9

• text has no color and error：circular-view.css.map Not found

  #1768 opened a year ago
  15

• Local fasta file is fully loaded

  #1767 opened a year ago
  7

• Authentication Issue with JWT Tokens in Cross-Application Setup (Django-Generated, Flask-Validated) for igv.js Requests

  #1762 opened 7 months ago
  9

• Some existing IGV pages fail with "Uncaught (in promise) TypeError: t.chromosomeOrder.split is not a function"

  #1761 opened 10 months ago
  6

• Merged track not working properly with negative values

  #1758 opened a year ago
  0

• Provided http headers missing on some request step when loading 'wig' track

  #1757 opened 10 months ago
  7

• In the Genes Track, The Exon should be -1 position but it look like -2.

  #1753 opened a year ago
  2

• A bug when using CSI index for BAM alignments

  #1749 opened a year ago
  6

• Problems when quickly clicking the zoom button

  #1748 opened a year ago
  1

• Aliases not iterable

  #1747 opened a year ago
  3

• In the GENE Track, The Exon should be -1 position but it looks like -2.

  #1746 opened a year ago
  8

• Using Zoom in button or Zoom slider result in NaN values for reference coordinates when using a JSON session

  #1744 opened a year ago
  5

• Sort samples shown in vcf variant track by genotype

  #1743 opened 6 months ago
  5

• igv.js security concern related to s3 bucket names with '.' and cors

  #1740 opened a year ago
  2

• The error for URL

  #1739 opened a year ago
  2

• Challenges Making Authenticated Requests to S3 without Pre-signed URLs

  #1736 opened a year ago
  3

• Track scroll not working in splitted regions view

  #1730 opened a year ago
  3

• option to disable ROI display

  #1729 opened a year ago
  1

• mapping quality filtering

  #1727 opened 6 months ago
  2

• Intermittent Error "Cannot read properties of null (reading 'length')" when loading CRAM tracks

  #1726 opened a year ago
  5

• is:issue is:open Visualization of gene fusion from vcf file and RNA seq data

  #1719 opened 10 months ago
  5

• Support broadPeak and gappedPeak. Renamed - was "Error creating track. Could not determine track type for file: [object File]"

  #1717 opened 8 months ago
  2

• Insertions are collapsed with variants at neighboring positions even when track is expanded

  #1714 opened 7 months ago
  9

• Adding rhesus macaque genome reference

  #1713 opened 6 months ago
  2

• IGV web not searching gff file

  #1716 opened 8 months ago
  8

• Edit url and indexUrl after the igv browser creation (S3 signed URL expiration)

  #1709 opened 8 months ago
  10

• Adding support for bedmethyl files

  #1696 opened 8 months ago
  6

• "invalid stored block lengths" upgrading from 2.5.2 to 2.15.5

  #1691 opened a year ago
  24

• Possible bug on Exon/Intron render

  #1688 opened a year ago
  4

• XSS vulnerability in igv.js

  #1687 opened a year ago
  6

• Discrepancy in Total Counts Displayed at the Same Position in IGV and IGV.js for the Same BAM File

  #1685 opened a year ago
  6

• Can not read ".gvcf.gz" extension

  #1683 opened a year ago
  3

• Question: how to set up dev environment

  #1682 opened a year ago
  1

• Alignment and splice Junctions

  #1681 opened a year ago
  2

• igv.js With R Shiny

  #1679 opened a year ago
  2