Issues
- 1
- 0
Outdated version of bcftools in dockerfile: "Unsorted positions", position 0 vs. 4294967296
#239 opened by bartgrantham - 1
- 4
library error in smoove
#237 opened by poddarharsh15 - 4
issue with installation smoove via conda
#236 opened by Ana1335 - 3
- 1
lumpy_filter not on $PATH
#234 opened by Sreelekshmi-291 - 5
only histo file outputs from smoove call
#235 opened by Ana1335 - 5
Failed to open -: unknown file type, panic
#233 opened by lilymaya - 2
- 4
A bug when installing smoove with conda
#232 opened by Ceonham - 5
smoove paste error
#231 opened by ygwang1 - 0
Multiple issues
#229 opened by carsonhh - 0
Why REF = N?
#228 opened by robertzeibich - 1
using multiple bams from same sample - does not finish running & trims the sequencing run number from the sample name
#224 opened by heidihyang - 3
`--name` parameter does not work
#227 opened by bounlu - 12
- 1
pre-processing for split & discordant read-pairs?
#223 opened by heidihyang - 2
- 3
Polyploidy
#220 opened by goeckeritz - 0
- 2
panic: open /path/to/*.bam: no such file or directory
#218 opened by Gummy89 - 4
Run smoove for single sample?
#217 opened by karoliinas - 6
lumpy filter remove too much reads
#205 opened by yefanglee - 2
non-SV filtering
#215 opened by torakichi1219 - 1
No INS records
#216 opened by zhixue - 1
sanity checks for sorted and RGs
#214 opened by hemstrow - 5
Smoove not working !!!!!! Failed to read from standard input: unknown file type panic: write |1: broken pipe
#200 opened by mansi800 - 0
Docker image missing svtyper
#213 opened by mcv053 - 2
smoove calls huge number of calls
#208 opened by Manuelaio - 1
samtools index: failed to create index for *mybamfile* panic: exit status 1
#212 opened by FrancescaMiccolis - 2
bcftools: error while loading shared libraries: libopenblas.so.0: cannot open shared object file: No such file or directory > gsort version 0.1.4
#211 opened by FrancescaMiccolis - 2
[smoove] 2022/11/15 10:20:53 starting with version 0.2.8 [smoove] 2022/11/15 10:20:53 lumpy executable not found in PATH
#209 opened by assane-mbodj - 1
missing pair end parameters:mean stdev
#210 opened by distilledchild - 4
runtime: failed to create new OS thread
#207 opened by asylvz - 3
Question about Exclude region
#206 opened by hayeon-pak - 9
libcrypto.so.1.0.0: cannot open shared object file error with biocontainers
#193 opened by georgiesamaha - 3
smoove duphold error
#204 opened by prasundutta87 - 2
important_regions bed
#203 opened by skose82 - 5
- 4
Error while running smoove genotype: "panic: fork/exec $PATH/bin/svtyper: too many open files"
#201 opened by Giuseppe1995 - 2
Smoove Call panic exit segmentation violation followed by unknown file type
#199 opened by mrburke00 - 8
panic:gzip: invalid header
#198 opened by gaom001 - 4
panic: sam: duplicate program name: line 3430: "@PG\tID:SAMBLASTER\tVN:0.1.24\tCL:samblaster -i dummy.cram.readsorted.sam -o dummy.cram.samblster.sam --addMateTags"
#197 opened by AlecBayliff - 2
Error reading index file from S3 bucket
#196 opened by james-guevara - 8
"Missing pair end parameters:mean stdev" and histo files are empty.
#195 opened by ggoodstudydaydayup - 2
IMPRECISE Confuse
#194 opened by cfz1998 - 2
mosdepth error
#192 opened by pauline-ng - 5
Error in lumpy-filter
#191 opened by Martaprf - 3
gff format for GRCh38
#190 opened by redincla