Daylily Informatics
Multi-omic Informatics and Operations Consulting Services.
United States of America
Pinned Repositories
alignstats
Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
alignstats-1
Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
daylily
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
fedex_tracking_day
Python Module Interfacing w/The FedEx Tracking API
github_markdown_text_colorizer
Service to return images of text where the input text can have font, font size and color set
img_stitcher_day
Playing around with merging images taken of the outside of a tube.
rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
snakemake-executor-plugin-pcluster-slurm
slurm executor for use by snakemake when running on the slurm flavor which is unique to aws parallel cluster slrum pcluster.
snakemake-executor-plugin-pcluster-slurm-ref
A Snakemake executor plugin for submitting jobs to a SLURM cluster
zebra_day
Zebra Label Printing library & API (for network connected printers). Manage 100s of printers and ZPL label templates in one place.
Daylily Informatics's Repositories
Daylily-Informatics/daylily
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
Daylily-Informatics/zebra_day
Zebra Label Printing library & API (for network connected printers). Manage 100s of printers and ZPL label templates in one place.
Daylily-Informatics/fedex_tracking_day
Python Module Interfacing w/The FedEx Tracking API
Daylily-Informatics/github_markdown_text_colorizer
Service to return images of text where the input text can have font, font size and color set
Daylily-Informatics/img_stitcher_day
Playing around with merging images taken of the outside of a tube.
Daylily-Informatics/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
Daylily-Informatics/snakemake-executor-plugin-pcluster-slurm-ref
A Snakemake executor plugin for submitting jobs to a SLURM cluster
Daylily-Informatics/.github
github profile README.md
Daylily-Informatics/accept-a-payment
Learn how to accept a payment from customers around the world with a variety of payment methods.
Daylily-Informatics/bloom
Templated Abstract Polymorphic (and opinionated) LIMS
Daylily-Informatics/bulk_sms
Daylily-Informatics/bwa-mem-scale
Daylily-Informatics/cronicle-edge
Cronicle V2 (Orchestra) community prototype
Daylily-Informatics/gspread
Google Sheets Python API
Daylily-Informatics/HGTector
HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
Daylily-Informatics/sambamba
Tools for working with SAM/BAM data
Daylily-Informatics/snakemake-executor-plugin-pcluster-slurm
slurm executor for use by snakemake when running on the slurm flavor which is unique to aws parallel cluster slrum pcluster.
Daylily-Informatics/yaml_config_day
Slim Python yaml Config Manager
Daylily-Informatics/Atlas
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
Daylily-Informatics/aws-parallelcluster-cost-allocation-tags
Daylily-Informatics/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Daylily-Informatics/jinja2_fmt_day
Simple tool to standardize the indentation of jinja2 files.
Daylily-Informatics/metapub
Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
Daylily-Informatics/metapub_peep
Slim fastapi / jinja2 web application to expose metapub command line functionality.
Daylily-Informatics/slim_goodie
Minimal http server ( fastapi jinja2 supabase oauth2 )
Daylily-Informatics/smk-simple-slurm
A simple Snakemake profile for Slurm without --cluster-config
Daylily-Informatics/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
Daylily-Informatics/tmhmm.py
A transmembrane helix finder in Python 3.
Daylily-Informatics/transXpress
transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation
Daylily-Informatics/xcures_day
python wrapper for the xcures REST api