Deep Medical Imaging Lab (PI Reuter)
Repositories of the Reuter DeepMI Lab
DZNE Bonn Germany & Harvard Medical School Boston USA
Pinned Repositories
3d-neuro-seg
Repository to our 3d neuro-anatomic segmentation method submitted to the MIDL 2022 conference
BrainPrint
A python-only derivative of the original BrainPrint scripts
BrainPrint-legacy
Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)
DISCUS
The repository contains code for the Geometric Deep Learning for Diffusion MRI Signal Reconstruction with Continuous Samplings (DISCUS) project
FastSurfer
PyTorch implementation of FastSurferCNN
FatSegNet
Deep CNN for Abdominal Adipose Tissue Segmentation on Dixon MRI
fslmer
Univariate and mass-univariate linear mixed-effects analysis for FreeSurfer imaging data.
fsqc
A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
LaPy
Toolbox for Differential Geometry on Triangle and Tetrahedra Meshes (FEM, Laplace, Poisson, Heat Flow ...)
olf-bulb-segmentation
Automated Olfactory Bulb Segmentation Pipeline for T2-Weighted MRI
Deep Medical Imaging Lab (PI Reuter)'s Repositories
Deep-MI/FastSurfer
PyTorch implementation of FastSurferCNN
Deep-MI/LaPy
Toolbox for Differential Geometry on Triangle and Tetrahedra Meshes (FEM, Laplace, Poisson, Heat Flow ...)
Deep-MI/fsqc
A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
Deep-MI/FatSegNet
Deep CNN for Abdominal Adipose Tissue Segmentation on Dixon MRI
Deep-MI/BrainPrint-legacy
Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)
Deep-MI/BrainPrint
A python-only derivative of the original BrainPrint scripts
Deep-MI/olf-bulb-segmentation
Automated Olfactory Bulb Segmentation Pipeline for T2-Weighted MRI
Deep-MI/fslmer
Univariate and mass-univariate linear mixed-effects analysis for FreeSurfer imaging data.
Deep-MI/3d-neuro-seg
Repository to our 3d neuro-anatomic segmentation method submitted to the MIDL 2022 conference
Deep-MI/DISCUS
The repository contains code for the Geometric Deep Learning for Diffusion MRI Signal Reconstruction with Continuous Samplings (DISCUS) project
Deep-MI/hipsta
HIPSTA - a python package for hippocampal shape and thickness analysis
Deep-MI/Deep-MI.github.io
Deep Medical Imaging Lab Webpage
Deep-MI/head-motion-from-MRI
Code for the paper "Estimating Head Motion from MRI", which predicts motion scores directly from MRI images.
Deep-MI/fastsurfer-webpage
Jekyll Webpage for the FastSurfer project
Deep-MI/head-motion-tools
Deep-MI/VINNA4neonates
Newborn Whole Brain Segmentation with VINNA
Deep-MI/WhipperSnapPy
Python OpenGL Tool for Screenshots of Surface Overlays