DenisSch
Group leader @UniHeidelberg @uniklinik_hd focusing on #HighlyMultiplexedImaging and #spatialomics technologies and analysis.
Heidelberg, Germany
Pinned Repositories
3dst
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
basic-illumination
ImageJ BaSiC shading correction for use with Ashlar
CyCif_Manager
Manage CyCIF Pipeline on HMS O2
histoCAT
Histology Topography Cytometry Analysis Toolbox
MIBI
mcmicro
Multiple-choice microscopy pipeline
mcmicro-ilastik
Ilastik segmentation module for mcmicro
quantification
Quantification module for mcmicro
histoCAT
Histology Topography Cytometry Analysis Toolbox
DenisSch's Repositories
DenisSch/MIBI
DenisSch/3dst
DenisSch/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
DenisSch/basic-illumination
ImageJ BaSiC shading correction for use with Ashlar
DenisSch/CyCif_Manager
Manage CyCIF Pipeline on HMS O2
DenisSch/histoCAT
Histology Topography Cytometry Analysis Toolbox
DenisSch/cytokit
Microscopy Image Cytometry Toolkit
DenisSch/DenisSch.github.io
DenisSch/Ilastik_ROI_selection
DenisSch/IMCWorkflow
Overview repository on IMC data analysis
DenisSch/mcmicro
Multiple Choice Microscopy
DenisSch/mcmicro-1
Multiple-choice microscopy pipeline
DenisSch/MITI
Minimum Information about Tissue Imaging
DenisSch/miti-consortium.org
MITI Consortium website
DenisSch/napari
napari: a fast, interactive, multi-dimensional image viewer for python
DenisSch/neighbouRhood
Adds an R implementation for the HistoCAT neightbourhood analysis that runs from CellProfiler output.
DenisSch/nextflow
A DSL for data-driven computational pipelines
DenisSch/pca_analysis_toolkit
Analysis toolkit for exploratory analyses in the Pre-Cancer Atlas project
DenisSch/ripgrep
ripgrep recursively searches directories for a regex pattern while respecting your gitignore
DenisSch/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
DenisSch/Schapiro-Lab-Website
DenisSch/svca