labsyspharm/quantification

Issues

• Release 1.6.0 failed to build

  #50 opened 5 months ago by kbestak
  3

• Missing version file

  #51 opened 5 months ago by LukasHats
  1

• CommandSingleCellExtraction.py Missing

  #48 opened 7 months ago by hannah413
  1

• Update skimage.measure._regionprops.PROP_VALS when upgrading scikit-image

  #46 opened 7 months ago by josenimo
  3

• Enable output of version number via command line

  #45 opened 7 months ago by FloWuenne
  0

• Update skimage version to at least 0.23.1 to get intensity_std regionprops metric

  #47 opened 7 months ago by jmuhlich
  0

• Compensate for lateral spillover

  #36 opened 3 years ago by ArtemSokolov
  2

• Add spot counting

  #20 opened 5 years ago by DenisSch
  20

• Clean up --intensity_props docs in README

  #44 opened 2 years ago by jmuhlich
  1

• Bug: IndexError in mcmicro and standalone

  #41 opened 2 years ago by josenimo
  2

• Issue with cellID between nuclear and cytoplasmic masks

  #40 opened 2 years ago by josenimo
  3

• Allow other output formats (e.g., AnnData)

  #39 opened 3 years ago by ArtemSokolov
  0

• Enable long format for .csv output

  #38 opened 3 years ago by ArtemSokolov
  0

• Enable post-log transform quantification

  #37 opened 3 years ago by ArtemSokolov
  0

• Check for a mismatch against markers.csv

  #32 opened 3 years ago by ArtemSokolov
  3

• Migrate to 1-based indexing

  #25 opened 3 years ago by ArtemSokolov
  1

• [Major bug] Mismatch of cells when quantifying multiple masks

  #28 opened 3 years ago by ArtemSokolov
  1

• Provide an option to move the mask suffix from column names to filenames

  #26 opened 3 years ago by ArtemSokolov
  1

• Add more shape features

  #27 opened 3 years ago by DenisSch
  0

• TypeError: unsupported operand type(s) for +: 'float' and 'str'

  #23 opened 4 years ago by DenisSch
  2

• x and y coordinates are mixed up in the output

  #18 opened 5 years ago by ArtemSokolov
  15

• If marker_name not available it throws an error

  #16 opened 5 years ago by DenisSch
  4

• Enable "minimal" and "full" CSV loading

  #14 opened 5 years ago by DenisSch
  3

• Channels with the same name handling

  #12 opened 5 years ago by DenisSch
  3

• Remove memory usage prints

  #11 opened 5 years ago by DenisSch
  0

• Memory issues

  #7 opened 5 years ago by DenisSch
  19

• Error on o2

  #9 opened 5 years ago by DenisSch
  0

• Exemplar-001 fails on 02

  #6 opened 5 years ago by DenisSch
  2

• Path handling fails - have you seen this before?

  #2 opened 5 years ago by DenisSch
  6