📦 PDEs Dataset Generator

A tool for generating datasets for Partial Differential Equations (PDEs) from ARCSim, FEniCS and SU2.

💡 Introduction

Research on PDEs needs ground truth datasets. Several tools have been developed and among all, the open-source FEniCS is one of the most famous ones. Our goal is to provide tools for more easily creating such datasets and save them in the DGL graph format.

Features:

Compressed scripts containing full generating process, including creating domain, generating mesh, creating boundary constrains, solve function, transfer mesh and result to dgl graph and saving
Results are transferred to DGL graph, which is convenient to use in graph models; we also provide numpy tools
Detailed tutorials with notebooks to show how our scripts work and knowledge about using ARCSim, FEniCS and SU2
Useful mini tools, including mesh to DGL transferring and modified dgl graph plotting

🔧 Environment

Python Version: 3.6 or later
Python Packages: jupyterlab, fenics, dgl, numpy, torch, matplotlib

📁 Structure

.
├── fig/
├── notebook/
│   └── *
├── src/
│   ├── utils/
│   └── *
└── README.md

fig: example figures
notebook: tutorials in jupyter notebook format
src: all source code will be here, including scripts, tools
- utils: mini tools will be here, including dgl transferring, graph plot

Here are brief guides for the supported PDE simulators:

Guide with ARCSim:
Guide with Fenics:
Guide with SU2:

📖 Guide with ARCSim

Step 1. Download or Clone this repository

Step 2. ArcSim installation

You may find the repository with fixes here with further instructions. To install it, run the following:

git clone https://github.com/kaist-silab/arcsim.git && cd arcsim/
sudo chmod +x install.sh && sudo ./install.sh

At this point, you should be ready to go.

Step 3. ArcSim simulation and .obj file saving

Let's consider the flag example. In the ArcSim folder, make a new directory called data. Then run:

bin/arcsim simulate conf/flag.json data/

(you may also run simulateoffline if you cannot visualize on your computer

When the simulation ends (we may do that with Esc as well) copy the conf/flag.json into the folder where we saved the simulation, in our casedata/ and run:

bin/arcsim generate data/

This will generate .obj files that we can load into Python with pywavefront and the obj_to_dgl method we provide.

Flag simulation with adaptive remeshing

📖 Guide with FEniCS

Step 1. Download or Clone this repository.

Step 2. Based on your requirement refer to the notebooks, where there are tutorials and examples. You can find all methods provided in the below list.

Step 3. Modify the parameters to generate your own datasets.

Provided methods:

Poisson process
- Customize domain & Single boundary control
- Square domain & Separate boundary control
Gaussian process
- Customize domain & Single boundary control (support time dynamic control)
- Square domain & Separate boundary control (support time dynamic control)
- Squares in square domain & Separate boundary control (support time dynamic control)
- Circles in circle domain & Single boundary control (support time dynamic control)

Support methods will keep updating. For more detail, you can refer to the project manager.