DongqiangZeng0808

DongqiangZeng0808's Stars

• hzi-bifo/RiboDetector

  Accurate and rapid RiboRNA sequences Detector based on deep learning

  Language:Python10116

• ollama/ollama

  Get up and running with Llama 3.3, Mistral, Gemma 2, and other large language models.

  Language:Go104k8.3k

• DerrickWood/kraken2

  The second version of the Kraken taxonomic sequence classification system

  Language:C++740275

• biobakery/kneaddata

  Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

  Language:Python11029

• LiaoWJLab/IKCscore

  Score calculation for immunotherapy prediction of non small cell lung caner

  Language:R21

• IOBR/book

  The tutorial of IOBR package

  Language:TeX4

• LiaoWJLab/LIRA

  Lung cancer Immunotherapy Response Artificial intelligence model

  Language:R1

• LiaoWJLab/TMEclassifier

  A classifier for tumor microenvironment subtype based on ensemble machine learning models

  Language:R2

• IOBR/IOBR

  IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.

  Language:R21855

• stemangiola/tidyHeatmap

  Draw heatmap simply using a tidy data frame

  Language:R32523

• zachmayer/caretEnsemble

  caret models all the way down :turtle:

  Language:R22574

• aristoteleo/dynamo-release

  Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

  Language:Python43059

• DynamoDS/Dynamo

  Open Source Graphical Programming for Design

  Language:C#1.7k635

• cole-trapnell-lab/monocle3

  Language:R356103

• powellgenomicslab/scPred

  scPred package for cell type prediction from scRNA-seq data

  Language:R8116

• dynverse/dynbenchmark_results

  Contains the results from the dynbenchmark evaluation, see https://github.com/dynverse/dynbenchmark

  72

• RogerGinBer/RHermes

  RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.

  Language:R257

• dtm2451/dittoSeq

  Color blindness friendly visualization of single-cell and bulk RNA-sequencing data

  Language:R19118

• RGLab/FAUST

  Full annotation using shape-constrained trees

  Language:C++255

• shenwei356/seqkit

  A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

  Language:Go1.3k160

• broadinstitute/infercnv

  Inferring CNV from Single-Cell RNA-Seq

  Language:R581166

• immunogenomics/symphony

  Efficient and precise single-cell reference atlas mapping with Symphony

  Language:Jupyter Notebook10022

• CRI-iAtlas/iatlas-app

  R Shiny app for CRI iAtlas, an interactive web portal for exploring immuno-oncology data. (iAtlas portal 2022 and beyond)

  Language:R123

• theislab/gastrulation_analysis

  Language:Jupyter Notebook101

• BiomedicalMachineLearning/stLearn

  A novel machine learning pipeline to analyse spatial transcriptomics data

  Language:Python20527

• snystrom/memes

  An R interface to the MEME Suite

  Language:R475

• navinlabcode/copykat

  Language:R21755

• grst/quanTIseq

  a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data

  Language:R1

• DongqiangZeng0808/Blasso

  Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers

  Language:R206

• fengdu78/lihang-code

  《统计学习方法》的代码实现

  Language:Jupyter Notebook19.1k6.3k